Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00113 ATGTCTAGAAACATGTTTTCtgatgttgattttgttgttgaagttgttacaaagtttgaaaatttggtttatgttaatttttctgACAACAGAATCCATAGTCAAATCAGTGATTCACTTGTTCCTTATGTGAATTTGTCAACTTTGGATTTGTCTCATAATTTGTTGTTTGGAAAATTACCCTCTAAAATTGTTGGTAATAGTGTTGAAATTTTGGATCTTTCAAGCAACAATTTTTCATTAGGGTTTTCTGAGTTTGATTTTGGGGACTGTAAGAAACTTGTTTGGTTGAGTTTATCTCACAATGTGATATCTGATTCTGAGTTTCCACAGAGTTTGAAAAATTGTCAAGTGTTGAAAAGTTTGGATCtttctcaaaatcaatttaaGATGAATATTCCTGGCGTTGTTCTCGGTGagttgaagaatttgaaggaaCTTTATTTAGGGAATAATCATTTTTATGGAGAAATATCTACGGAGCTTGGAAGTGTTTGTGAGAGTTTGGAAATTCTTGATCTTTCTATGAATAAGCTTTCTGGTGAGTTTCCTTTGGTTTTTGGAAAATGTTCATCTTTGAAGAGTCTTAACCTAGCTAAGAATTTTCTATATGGTAATTTCCTTGAAAATGTTGTTAGCAAACTTTCTAGTCTTAGATATCTCTCCGTGTCATTCAACAACATAACTGGAAATGTTCCTTTGTCGATTGTTGCAAATTGTACACAACTTCATGTTCTTGACCTGAGTTCGAACGGTTTCACTGGTAATGTTCCTTCGATGTTTTGTCCTTCGAAATTGGAGAAGTTGCTTCTAGCTGATAATCACCTTTCAGGGAATGTTCCCGCAAAACTCGGTGAATGCAAGAGTTTGAGAACAATTGATTTTAGCTTCAATAATTTGAGTGGTTCAATACCTAAGGAGGTTTGGTTTTTGCCTAATCTTTCTGACTTGATTATGTGGGCAAATAGTCTCACCGGCGAGATTCCTGAAGGAGTTTGTGTCAATGGAGGGAACCTCGAAACATTGATTCTTAACAACAATTTCATTTCTGGTTCAATTCCTAAGTCTATTGTAAATTGTACCAACATGATTTGGGTTTCGCTTGCTAGTAACCACATTACTGGAGAAATTCCTGCTGGTATCGGGAATCTGAACGAACTTGCTATTCTTCAATTAGGTAACAATTCTCTAGTTGGAAAGATTCCTCCCGACATTGGAATGTGCAAGAGACTAATATGGTTGGATTTGACTAGCAATAACCTCACTGGTACTATTCCGCCCCAGCTTGCGAATCAAGCTGGATTGGTTATTCCGGGGGGTGTTTCGGGTAAGCAATTTGCATTTGTGAGAAATGAAGGTGGTACTAATTGTAGAGGCGCCGGAGGACTTGTTGAGTTTGAAGATATAAGGGTTGAGAGGCTTGAAAGTTTTCCGATGGTTCACTCTTGTCCATTAACCAGAATATATTCTGGTTATACAGTTTATACTTTTACCAACAATGGAAGCATGATTTTCCTTGATCTTTCTTACAATTTCTTATCAGGGACTATTCCAGAACATTTAGGCGCAATGTCCTATTTGCAGGTCTTAAATCTAGGACACAATAGGCTCAATGGAAAAATTCCAGAAAGTTTCGGTGATTTAAAAGCTCTAGGAGTGCTTGATCTATCTCATAATAGCCTTCATGGATTCATCCCTGGATCATTACAATCTCTATCATTTCTCAGTGACTTTGATGTGTCGAATAATAACCTTAGTGGATCGATTCCTTCTGGTGGTCAGCTAACAACTTTCCCGGCATCTAGATACGAAAACAACTCAAACCTTTGTGGTGTTCCCTTACTGAAGAAATGCGGCAGTTCAAATCACTCGGTAGCTTTGCGTACATCAAAGAAGAACCAACCTATTGCAGTTTTGATTGTCATTTCCCTCTTTTTCTTCCTcttgtttgttgttgtggttttATTGGCTTCATATCGAATTCGAAAGACTCGGAAGAAGGATGAATTGAGGGAAAAATATGTAGAAAGTCTTCCAACATCTGGTACCAGTAGTTGGAAGCTTTCGACCTTTCCTGAGCCTCTGAGCATCAATGTCGCCACGTTCGAGAAGCCTTTGCGCAAGTTGACTTTCGCACATCTTCTTGAGGCTACTAACGGTTTCAGCTCTGAAAGTTTGATAGGTTCGGGAGGTTTCGGTGAAGTGTATAAAGCTAAGATGAAAGACGGCAGTGTTGTTGCTATCAAGAAACTCATCCGTGTCACAGGCCAGGGAGACAGAGAGTTCATAGCCGAAATGGAAACGATCGGCAAGATTAAGCACAGGAACCTTGTTCCACTTCTTGGTTACTGTAAAGTTGGAGATGAAAGGCTACTTGTGTACGAGTACATGAAATATGGAAGTTTAGAAACTGTTCTACATGAGAGGAACAAAAGTTCAAAGCTTGCTTGGGAAACAAGAAAGAAGATAGCACTAGGATCAGCGAGAGGTCTTGCATTTCTTCATCATAGTTGCATACCTCATATTATACATAGAGACATGAAGTCAAGCAATATTCTTCTTGACGAAAATTTTGAGGCTAGAGTTTCAGATTTCGGTATGGCGAGATTGGTTAATGCTCTTGACACTCATCTCACAGTTAGCACACTTGCAGGAACACCAGGTTATGTACCACCAGAATACTATCAAAGTTTTCGATGCACAGCAAAAGGCGATGTTTATAGCTATGGTGTCATACTGTTAGAACTTCTATCAGGGAAGAGACCGATCGATTCGTCTGAGTTCGGAGATGATAACAACCTTGTTGGATGGTCTAAGAAGCTTTATAGAGAGAGAAGAATTATTGAAATACTTGATCCTGATTTGGTTACACAAACATCTAGTGAAGGTGAACTTTTTCAATATTTGAGAATTGCTTTTGAATGTTTAGAGGAAAGACCGTACCGACGTCCAACGATGATACAAGTGATGGCGATGTTTAAAGAGCTTCAAGCTGATACAGATAATGATAGTGTTATTGATGGTTTCTCTATGAAAGACAATGTTATTGATGAAACATGA 3060 0.3706 MSRNMFSDVDFVVEVVTKFENLVYVNFSDNRIHSQISDSLVPYVNLSTLDLSHNLLFGKLPSKIVGNSVEILDLSSNNFSLGFSEFDFGDCKKLVWLSLSHNVISDSEFPQSLKNCQVLKSLDLSQNQFKMNIPGVVLGELKNLKELYLGNNHFYGEISTELGSVCESLEILDLSMNKLSGEFPLVFGKCSSLKSLNLAKNFLYGNFLENVVSKLSSLRYLSVSFNNITGNVPLSIVANCTQLHVLDLSSNGFTGNVPSMFCPSKLEKLLLADNHLSGNVPAKLGECKSLRTIDFSFNNLSGSIPKEVWFLPNLSDLIMWANSLTGEIPEGVCVNGGNLETLILNNNFISGSIPKSIVNCTNMIWVSLASNHITGEIPAGIGNLNELAILQLGNNSLVGKIPPDIGMCKRLIWLDLTSNNLTGTIPPQLANQAGLVIPGGVSGKQFAFVRNEGGTNCRGAGGLVEFEDIRVERLESFPMVHSCPLTRIYSGYTVYTFTNNGSMIFLDLSYNFLSGTIPEHLGAMSYLQVLNLGHNRLNGKIPESFGDLKALGVLDLSHNSLHGFIPGSLQSLSFLSDFDVSNNNLSGSIPSGGQLTTFPASRYENNSNLCGVPLLKKCGSSNHSVALRTSKKNQPIAVLIVISLFFFLLFVVVVLLASYRIRKTRKKDELREKYVESLPTSGTSSWKLSTFPEPLSINVATFEKPLRKLTFAHLLEATNGFSSESLIGSGGFGEVYKAKMKDGSVVAIKKLIRVTGQGDREFIAEMETIGKIKHRNLVPLLGYCKVGDERLLVYEYMKYGSLETVLHERNKSSKLAWETRKKIALGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPIDSSEFGDDNNLVGWSKKLYRERRIIEILDPDLVTQTSSEGELFQYLRIAFECLEERPYRRPTMIQVMAMFKELQADTDNDSVIDGFSMKDNVIDET 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00113 1019 PRINTS Leucine-rich repeat signature 169 182 - -
Tsu03g00113 1019 PRINTS Leucine-rich repeat signature 548 561 - -
Tsu03g00113 1019 ProSitePatterns Protein kinases ATP-binding region signature. 727 750 IPR017441 GO:0005524
Tsu03g00113 1019 SUPERFAMILY L domain-like 237 603 - -
Tsu03g00113 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672|GO:0006468
Tsu03g00113 1019 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 1 1 1004 - -
Tsu03g00113 1019 Gene3D Ribonuclease Inhibitor 1 618 IPR032675 -
Tsu03g00113 1019 Pfam Protein kinase domain 722 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00113 1019 Pfam Leucine Rich Repeat 338 360 IPR001611 GO:0005515
Tsu03g00113 1019 Pfam Brassinosteroid receptor island domain 434 498 IPR045381 -
Tsu03g00113 1019 Gene3D Phosphorylase Kinase; domain 1 684 796 - -
Tsu03g00113 1019 Pfam Leucine rich repeat 526 585 IPR001611 GO:0005515
Tsu03g00113 1019 ProSiteProfiles Protein kinase domain profile. 721 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00113 1019 SUPERFAMILY RNI-like 6 259 - -
Tsu03g00113 1019 Gene3D Transferase(Phosphotransferase) domain 1 797 1014 - -
Tsu03g00113 1019 Gene3D - 441 498 - -
Tsu03g00113 1019 SUPERFAMILY Protein kinase-like (PK-like) 705 1000 IPR011009 -
Tsu03g00113 1019 SMART serkin_6 721 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00113 1019 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 1004 - -
Tsu03g00113 1019 SMART LRR_typ_2 548 571 IPR003591 -
Tsu03g00113 1019 SMART LRR_typ_2 311 335 IPR003591 -
Tsu03g00113 1019 SMART LRR_typ_2 524 547 IPR003591 -
Tsu03g00113 1019 SMART LRR_typ_2 141 165 IPR003591 -
Tsu03g00113 1019 SMART LRR_typ_2 43 67 IPR003591 -
Tsu03g00113 1019 SMART LRR_typ_2 384 408 IPR003591 -
Tsu03g00113 1019 SMART LRR_typ_2 215 239 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00113 Tsu-Chr3 934885 937968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00113 122 621 Receptor kinase-like Gene Family AT1G55610 30.420 7.85e-44 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Tsu03g00113 Pkinase 7.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00113 - - lja:Lj0g3v0359679.1 1598.56