Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00103 ATGGCAAACAAACATCAAGGCAACAATTCTGTCTTAAAACTTTGTTGTTCATCAAACCGTGCTATAACCTTAATACAAAAAGTCATTGCAGAAATTATTGGTACATATTTTCTAGTCTTTGCCGGTTGTGGTGCTGTAGCAATCAATCAAATCTATGGCTCAATCACTTTCCCCGGAATTTGTATCACTTGGGGGTTGATTGTAACTGTCATGTGTTACTCTGTTGGTCATATCTCTGGCGGCCTTTTCAACCCCGCCGTTGCAATAACTTGGGCTATCTTTCGCCGAATAACGGTTATAGAAGCTCCGCTTTATATCGCGGCTGAGTTACTTGGATCGACGCTCGCAAGTGTCACGTTATCTTTAATGTTTGATATAACACCAAAATCTTATTTTGGAACTGTACCAGTTGGATCGGACGGTCAATCATTAGTTGTCGAaataattataagttttttattaatgtttgtGATTTCAGCTGTTACAACAGATGATAGAGCGGTTGATGACTCCGCGAGTGTCGCGGTTGGAATGACAATAATGTTGAATCTTTTTATTGCTGGACCGGTATCAGGAGCATCGATGAATCCAGCACGAAGTATCGGTCCTGCAATTGTGATACATATTTATAAAGGGTTATGGATATATATAGTTGGTCCAATTGTTGGAGCCATAGCTGGAGCACTTGCTTATAACTTTCTTAGATCGGTTTACAAGCCACCTTCAGAGGTATCAACAGACAAGTCACCATCAGAGTTAACAACAGACAAACAATCTTCAGAGATTACACCAGAACAACCATTGAGGAGCATAGTTGTAGATTGA 825 0.3939 MANKHQGNNSVLKLCCSSNRAITLIQKVIAEIIGTYFLVFAGCGAVAINQIYGSITFPGICITWGLIVTVMCYSVGHISGGLFNPAVAITWAIFRRITVIEAPLYIAAELLGSTLASVTLSLMFDITPKSYFGTVPVGSDGQSLVVEIIISFLLMFVISAVTTDDRAVDDSASVAVGMTIMLNLFIAGPVSGASMNPARSIGPAIVIHIYKGLWIYIVGPIVGAIAGALAYNFLRSVYKPPSEVSTDKSPSELTTDKQSSEITPEQPLRSIVVD 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00103 274 Pfam Major intrinsic protein 21 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g00103 274 Gene3D Glycerol uptake facilitator protein. 2 248 IPR023271 -
Tsu03g00103 274 MobiDBLite consensus disorder prediction 242 266 - -
Tsu03g00103 274 PANTHER AQUAPORIN NIP2-1 8 244 IPR034294 -
Tsu03g00103 274 PANTHER AQUAPORIN NIP4-1-RELATED 8 244 - -
Tsu03g00103 274 MobiDBLite consensus disorder prediction 241 274 - -
Tsu03g00103 274 CDD MIP 26 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g00103 274 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g00103 274 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g00103 274 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g00103 274 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g00103 274 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g00103 274 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu03g00103 274 SUPERFAMILY Aquaporin-like 22 240 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00103 Tsu-Chr3 833667 834745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00103 16 261 Major Intrinsic Protein MIP AT5G37820 61.943 5.08e-107 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00103 K09874 - gmx:100791338 352.829