Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu03g00101 | ATGGCAACAAAGTTAactcttctcttccttctcatAACTCTCCTCACAATTGTAACTTCAACACCAACAAATTTCATAAAATCCTCATGTAGAACAACATCATACCCAACACTTTGTGTTGAATCACTCTCTAGCTATGCATCAACAATCCAACAAGATCCACACCAATTAGTCCAAACAGCTTTATCACTTAGCCTCAACAAAACTCAATCCACAAAAAGCTTTGTTACAAAATGCAAAAGTGTTAAGAATCTTAAACCAAGAGAATATGCTGCTCTTCATGATTGTGTTGAAGAAATCACTGATAGTGTTGATAGGCTAAGCCGTTCATTAAAAGAGCTTAAACTTTGCAAGATAAGTGGTCAAGATTTCAATTGGCATATAAGCAATGTTGAGACATGGGTTAGCTCAGCTTTGACTGATGCAAGCACTTGTAGTGATGGGTTTGGTGGAAAAGCACTTGATGGAAGAATGAAAGCATCTATTAGATCTAGAATGGTTAATGTTGCTCAAGTTACTAGTAATGCTCTTTCACTTATCAATCAATATGCTACTAATCATTAG | 564 | 0.344 | MATKLTLLFLLITLLTIVTSTPTNFIKSSCRTTSYPTLCVESLSSYASTIQQDPHQLVQTALSLSLNKTQSTKSFVTKCKSVKNLKPREYAALHDCVEEITDSVDRLSRSLKELKLCKISGQDFNWHISNVETWVSSALTDASTCSDGFGGKALDGRMKASIRSRMVNVAQVTSNALSLINQYATNH | 187 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu03g00101 | 187 | CDD | PMEI-like_3 | 28 | 185 | - | - | |
| Tsu03g00101 | 187 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 21 | 183 | IPR035513 | - | |
| Tsu03g00101 | 187 | PANTHER | PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN | 7 | 186 | - | - | |
| Tsu03g00101 | 187 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 5 | 183 | IPR006501 | GO:0004857 | |
| Tsu03g00101 | 187 | Pfam | Plant invertase/pectin methylesterase inhibitor | 24 | 179 | IPR006501 | GO:0004857 | |
| Tsu03g00101 | 187 | SMART | PMEI_2 | 21 | 179 | IPR006501 | GO:0004857 | |
| Tsu03g00101 | 187 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 24 | 183 | IPR035513 | - | |
| Tsu03g00101 | 187 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 7 | 186 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu03g00101 | Tsu-Chr3 | 809627 | 810190 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu03g00101 | 26 | 180 | Carbohydrate Esterase | AT3G14310 | 29.487 | 8.97e-20 | 84.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu03g00101 | - | - | gmx:100305900 | 277.33 |