Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00100 ATGACAACTAAGTTAAaccttctcttccttctcttaACTCTCCTCACAATTGCAACTTCAACACCAACAAATTTCATAAAATCCTCATGTAGCACAACATCATACCCAACACTTTGTGTTGAATCTCTCTCTAGCTATGCATCAACAATCCAACAAGATCCTCATCAATTAGTCCAAACAGCTTTATCACTTAGCCTCAACAAAACTCAATCCACAAAAAGCTTTGTTACAAAATGCAAAAGTTTTAAGAATCTTAAACCAAGAGAATATGCTGCTCTTCATGATTGTGTTGAAGAAATCACTGATAGTGTTGATAGGCTAAGCCGTTCATTAAAAGAGCTTAAACTTTGCAAGATAAGTGGTCAAGATTTCAATTGGCATATAAGCAATGTTGAGACATGGGTTAGCTCAGCTTTGACCGATGAAAGTACTTGTGGTGATGGGTTTGGTGGAAAAGCACTTGATGGAAAATTGAAAGCATCTATTAGATCTAGAATGGTTAATGTTGCTCAAGTTACTAGTAATGCTCTTTCACTTATCAATCAATATGCTACTAATCACTAG 564 0.3422 MTTKLNLLFLLLTLLTIATSTPTNFIKSSCSTTSYPTLCVESLSSYASTIQQDPHQLVQTALSLSLNKTQSTKSFVTKCKSFKNLKPREYAALHDCVEEITDSVDRLSRSLKELKLCKISGQDFNWHISNVETWVSSALTDESTCGDGFGGKALDGKLKASIRSRMVNVAQVTSNALSLINQYATNH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00100 187 CDD PMEI-like_3 28 185 - -
Tsu03g00100 187 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 24 183 IPR035513 -
Tsu03g00100 187 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 183 IPR035513 -
Tsu03g00100 187 SMART PMEI_2 21 179 IPR006501 GO:0004857
Tsu03g00100 187 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 7 186 - -
Tsu03g00100 187 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 183 IPR006501 GO:0004857
Tsu03g00100 187 Pfam Plant invertase/pectin methylesterase inhibitor 24 179 IPR006501 GO:0004857
Tsu03g00100 187 PANTHER PECTINESTERASE INHIBITOR-LIKE 7 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00100 Tsu-Chr3 804656 805755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00100 26 180 Carbohydrate Esterase AT3G14310 30.128 9.45e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00100 - - gmx:100305900 288.115