Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00097 ATGGCAATcattggaaaaatatttttcgtGATCTTGTTTTTATCTTCAATTTTCTCGATAGCCTCATCGAGAAAAGGACCTTCCTCAAACAACATAGATTGGTGGTGCAACCAAACACCACATCCTAAACCATGCAAACACTACACAACTCAAATGAACAAtcatttcaaaatcaaacatagaGTTGAATTTAGGGAAATGCTTCTTCAATTAGCATTAAAACAAGCTATCACCATGCAAAAAGAAGCACAAGAAAATTCTCATCAAAATTCGTCggtgcataaaatggttcaTGGTGATTGTTTGAAGCTTTTTGAAAACACAATCTTTCATCTAAACCGTACACTTGATGGATTaaacaattcaaacaaaacaTGTTCACCACATGATGCACAAACATGGCTCACAACTTCTCTCACAAATATTGAAACATGTAAAAGTGGAGCTTTAGAACTCAATGCTCAAGATTTCAATTTCATTGTGCAAACCAATGTCATTGAAATGATAAGGAACGTCTTAGCCATCAATATGTATTTCATGAAACACAACAAAGAAACAAAAGAAGGGTTGTTTCCAAGTTGGTTTTCTAGGCATGAGAAGAAGCTTTTACAGACTAATTCTTCAATAAAGTTCAATCTTGTGGTTGCAAAAGATGGCTCTGGACATTTTAAAACTGTGCAAGCTGCTCTCGATGCTGCTGCTAAGAGAAAATATAAGACAAGGTTTGTGATACATGTAAAGAAAGGTGTTTATAGGGAGAATATTGAGGTTGCTGTTCATAATGATAATATTATGTTGGTTGGTGATGGGATgcaaaatacaataataacaaGTTCTAGAAGTGTTCAAGGAGGTTTTACCACTTATAGCTCTGCAACAGCTGGCATTGATGGACTTCACTTCATTGCACGTGATATAACGTTCCAAAATACCGCTGGTCTACACAAGGGCCAAGCTGTGGCACTTCGATCAGCCTCAGATCTCTCAGTCTTTTACCGATGTGCCATATCAGGTTACCAAGACACCCTCATGACTCATGCACAACGTCAATTTTATCGACAATGCTACATCTATGGCACTGTAGACTTCATCTTTGGTAACGCCACAGTGGTAtttcaaaattgtaaaattttcGCAAGAAAGCCTTTAGATGGTCAGGCTAACATGATCACTGCCCAAGGTCGAGGTGACCCATTCCAAAACACCGGAATTTCATTTCACAATTGTCAAATTTTGGCTGCATCCGATCTAAAGCCTGTCGTTGACAAGTACAATACCTTCTTGGGCCGGCCTTGGCAACAGTACTCAAGGGTTATGGTGATGAAAACTTTTATGGACACTTTAGTGAGTCCATTGGGTTGGTCTCCATGGGGTGACACTGATTTTGCTCAAGACACATTGTATTATGGTGAGTATGAAAATTATGGGCCTGGTTCTTCAACAGCAAATAGAGTGAAATGGCCTGGTTATCATGCCATAACAAGTCCAAATGAAGCATCAAAGTTTACAGTTAATGGACTCCTTGCTGGCCCAACATGGTTGGCGACAACAACTGTGCCATTTACTTCTGGGCTTTGA 1578 0.3688 MAIIGKIFFVILFLSSIFSIASSRKGPSSNNIDWWCNQTPHPKPCKHYTTQMNNHFKIKHRVEFREMLLQLALKQAITMQKEAQENSHQNSSVHKMVHGDCLKLFENTIFHLNRTLDGLNNSNKTCSPHDAQTWLTTSLTNIETCKSGALELNAQDFNFIVQTNVIEMIRNVLAINMYFMKHNKETKEGLFPSWFSRHEKKLLQTNSSIKFNLVVAKDGSGHFKTVQAALDAAAKRKYKTRFVIHVKKGVYRENIEVAVHNDNIMLVGDGMQNTIITSSRSVQGGFTTYSSATAGIDGLHFIARDITFQNTAGLHKGQAVALRSASDLSVFYRCAISGYQDTLMTHAQRQFYRQCYIYGTVDFIFGNATVVFQNCKIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQILAASDLKPVVDKYNTFLGRPWQQYSRVMVMKTFMDTLVSPLGWSPWGDTDFAQDTLYYGEYENYGPGSSTANRVKWPGYHAITSPNEASKFTVNGLLAGPTWLATTTVPFTSGL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00097 525 PANTHER PECTINESTERASE 1 524 - -
Tsu03g00097 525 Pfam Pectinesterase 212 510 IPR000070 GO:0030599|GO:0042545
Tsu03g00097 525 CDD PMEI-like_3 34 181 - -
Tsu03g00097 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 179 IPR035513 -
Tsu03g00097 525 Pfam Plant invertase/pectin methylesterase inhibitor 31 175 IPR006501 GO:0004857
Tsu03g00097 525 SMART PMEI_2 27 175 IPR006501 GO:0004857
Tsu03g00097 525 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 176 IPR006501 GO:0004857
Tsu03g00097 525 PANTHER PECTINESTERASE 1 524 - -
Tsu03g00097 525 ProSitePatterns Pectinesterase signature 2. 357 366 IPR033131 -
Tsu03g00097 525 Gene3D - 206 525 IPR012334 -
Tsu03g00097 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
Tsu03g00097 525 SUPERFAMILY Pectin lyase-like 210 524 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00097 Tsu-Chr3 789921 792124 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00097 26 525 Carbohydrate Esterase AT3G47400 56.286 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00097 K01051 - gmx:100806133 804.283