Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00079 ATGGATAGGATTCAAGAGAGAGATGAAAGTAACAGAAGTCGGCATTCATCGTCTTCGGTTGTAGCTCTAGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTCAACAAGTTTGTTCCTGAGGGAATGATTATCTTCAAGCTGATACATGTTCATGCTGGTATAGTAGGAGTTCCCACACCAATGGGAAATCTTCTCCCAATTTCACAAGTGCGTGATGATGTTGCGGCTGCTTACAGACAGGAAGTGGAGTGGCAGACAAATCAAATGCTTCTACCATTTAAGAAAATGTGTGAGCAGAGAAAGGTGCATGTAGATGTTGTAGTGATTGAATCGGATGATATGGCATCTGCAGTGGCGGAAGAAATAACTAAGGATGGTATAACCAAATTGGTTATTGGAGCTTCATCTGGTGGCTTATTTAAAAGTAAACACAAGGGTATGTCTGCAAAAATCTCAGTTTGCACTCCAAGATTTTGTACAGTTTATGCTGTTTCTAAAGGAAAACTGTCCATACGACCATCGGACATGCAGATTGATGAAAGCATTACAGATGACACAAGTGAAATCAGTTTTTCCTCCAGCAGCTCATCAAACTACACTTCTACTACTCGGACAGATTCTGGCTCGGTTGCATCATATGCTGCTTTACATTCATCTTCCTTGGCAACACAGCGATTTCAAGCTCTTTCAAATATGAATCAGAACCTTCTAAACACAACTCCTAGTTTGAATGAAACTAATCATTCTAGAGGCCAGTCCATTGATCTTGGACGAGGAAATGTTGCTACAAGTTCTGCTAGAAACTCAGATTTTGACCGTGGTTTGAGTCGAGCCTCTAGTTTCAGAAGCATTGTTTCAGATACTGATACTTGGATTTATGATCAAAATTCTTTAAAGGATGCGCCACTAGCTTCTAAACTTGCATCACCTAATAGACAGGAAAATTTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGTCCAAGGAATGCATGCAGTAGCTCAAACTGAGAACATCGATGCATCACGAAAGCTAAGTGAACTAAGCAAGAGGAGATCAGGAGAATCCATGAAAATGAAGGAGATTATTGCTAAGGAGGAAGTGGCTCAAGAATTAGCAAGacaagaaatagaaaaatatgaagCTGCAGCAAGAGAAGCTGCATATTTGAAAGAATCTGCTGAAAGAGAAGCTtcagaaagaaaagaaacagaATTGAAAGCTATTCGTGCTGCCAAAGAGAAAGAAAAGCTAGAGGATGCTCTGAGTGGTTCCACACCTCAGTACCGAAAGTTTATGTGGGATGAAATAGTTTCAGCTACTTCATCTTTCTCTGAAGATCTGAGAATTGGAATGGGTGCATATGGAATGGTGTATAAGTGCACTTTGCATCACACAACTGTTGCTGTTAAAGTTCTCCACTCTCCCGGAATCAGCCAAAACAAGCAATTCCAGCAGGAGTTGGAGATATTGAGCAGAATTCGTCATCCAAActtgcttcttcttcttggtGCATGTCCTGAACATGGTTGCCTTGTGTATGAATACATGGAAAATGGTAGCTTGGAGGATAGGCTATTTCAGAAAAACAGTACCACCGCAATCCCATGGTTTGATAGGTTTCGAATAGCTTGGGAAATTGCGTCAGCTCTTTCCTTTCTTCACAGCTCAAAGCCACAGCCTATCATCCATCGTGACTTGAAACCTGCGAACATCTTGCTTGGTGGTAACCTTGTCAGCAAGATTGGTGATATTGGTCTTTCTACGATTCTCACTTCAGACGATTTATCTACCATGTATAAGGACACAGCGCCTGTTGGCACACTCAGCTACATCGATCCTGAGTATCAAAGGAGTGGTTTAATATCTACGAAATCTGATGTTTATGCTTTCGGATTAGTGATGCTACAGTTGCTGACAGCTAAACCAGCAACAGCACTTACTCATGTGGTTGAAACAGCAATCGAGGACGGTAACTTAACAGATATATTAGATAAAAAGGCAGGATCATGGCCATTTCAAGAGACATTAGACTTAGCTCGATTAGCTTTGAGTTGTGCGGAGCTTCGGCGTAGAGACCGACCTGATTTGTTAGATCACGTGCTTCCTACATTGGAGAAGTTAAAAGAAGTTGCCGATAGGGCTCATTATTCCGCTTCAATGGTTATCCTTAAACCCAAAGCTCCAAACCATTTTATCTGCCCTATACTTCAGGATGTGATGGACGATCCTTGTGTTGCCGCAGATGGATATACATATGATCGAAAAGCAATCGAAAAATGGCTTGAAGAGAATGAGAAATCACCAATGACAAACATGGCTTTGTCTCATAAGATTCTAATTCCTAATTACACACTTCTATCAGCAATTTTGGAATGGAAATCGAAAGAAATATGA 2421 0.3998 MDRIQERDESNRSRHSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVHAGIVGVPTPMGNLLPISQVRDDVAAAYRQEVEWQTNQMLLPFKKMCEQRKVHVDVVVIESDDMASAVAEEITKDGITKLVIGASSGGLFKSKHKGMSAKISVCTPRFCTVYAVSKGKLSIRPSDMQIDESITDDTSEISFSSSSSSNYTSTTRTDSGSVASYAALHSSSLATQRFQALSNMNQNLLNTTPSLNETNHSRGQSIDLGRGNVATSSARNSDFDRGLSRASSFRSIVSDTDTWIYDQNSLKDAPLASKLASPNRQENFNLELEKLRIELRHVQGMHAVAQTENIDASRKLSELSKRRSGESMKMKEIIAKEEVAQELARQEIEKYEAAAREAAYLKESAEREASERKETELKAIRAAKEKEKLEDALSGSTPQYRKFMWDEIVSATSSFSEDLRIGMGAYGMVYKCTLHHTTVAVKVLHSPGISQNKQFQQELEILSRIRHPNLLLLLGACPEHGCLVYEYMENGSLEDRLFQKNSTTAIPWFDRFRIAWEIASALSFLHSSKPQPIIHRDLKPANILLGGNLVSKIGDIGLSTILTSDDLSTMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVMLQLLTAKPATALTHVVETAIEDGNLTDILDKKAGSWPFQETLDLARLALSCAELRRRDRPDLLDHVLPTLEKLKEVADRAHYSASMVILKPKAPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLEENEKSPMTNMALSHKILIPNYTLLSAILEWKSKEI 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00079 806 Pfam Protein tyrosine and serine/threonine kinase 457 705 IPR001245 GO:0004672|GO:0006468
Tsu03g00079 806 SMART Ubox_2 739 801 IPR003613 GO:0004842|GO:0016567
Tsu03g00079 806 CDD RING-Ubox_WDSUB1_like 740 780 - -
Tsu03g00079 806 CDD STK_N 20 172 - -
Tsu03g00079 806 Pfam U-box domain 736 803 IPR003613 GO:0004842|GO:0016567
Tsu03g00079 806 ProSiteProfiles U-box domain profile. 735 806 IPR003613 GO:0004842|GO:0016567
Tsu03g00079 806 SUPERFAMILY Protein kinase-like (PK-like) 434 706 IPR011009 -
Tsu03g00079 806 ProSitePatterns Protein kinases ATP-binding region signature. 458 479 IPR017441 GO:0005524
Tsu03g00079 806 Coils Coil 407 429 - -
Tsu03g00079 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 735 806 IPR013083 -
Tsu03g00079 806 Gene3D Phosphorylase Kinase; domain 1 430 524 - -
Tsu03g00079 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
Tsu03g00079 806 Gene3D HUPs 13 150 IPR014729 -
Tsu03g00079 806 SMART serkin_6 452 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00079 806 Gene3D Transferase(Phosphotransferase) domain 1 525 731 - -
Tsu03g00079 806 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 16 802 - -
Tsu03g00079 806 SUPERFAMILY RING/U-box 735 804 - -
Tsu03g00079 806 ProSiteProfiles Protein kinase domain profile. 452 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00079 806 PANTHER OS02G0152300 PROTEIN 16 802 - -
Tsu03g00079 806 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 147 - -
Tsu03g00079 806 Coils Coil 371 405 - -
Tsu03g00079 806 MobiDBLite consensus disorder prediction 242 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00079 Tsu-Chr3 658739 663442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00079 18 803 U-box Gene Family AT4G25160 52.913 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tsu03g00079 PK_Tyr_Ser-Thr 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00079 - - gsj:114409387 1194.49