Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00078 ATGGATAGGATTCAAGAGGCagatgaaaataataaaacttcAGTTGTTGCTCTAGCAATCAAGGGTAATAAGAAAAGCAAATATGTTGTACAATGGGCACTTGATAAATTTGTTCATGAAGGGATAAGTATCTTCAAGCTTATTCATGTAAGGGCTGTTATAAATGGAGTTCCAACACCAaTGGGAGATGTGCTTCCTATTTCACAAGTGCGAAATGATGTAGCAAATGCTTTCAGAAGGGAAGTGGAGTGGCAAACAAATCAAATGGTTCTACCTTTCAAGAGTTTGTGTGAGCAGAGAAAGGTGCATGTAGATGTTGTAGTGATTGAATCAGATGATGTAGCAACTGCAGTAGCAGAGGAAGTATCTAAGAATGTTATTACCAAACTTGTTCTTGGAGCTTCATCTTCTGGTATATTTAAAAGCAAACATAAGGGTATGTCTGCGAAAATATCAGTATGCACTCCAAGATTTTGTACAGTTTATGCTGTTTCGAAAGGAAAATTGTCCATACGGCAGTCAGACATGCAAACTGACGGAAACATTGTAGATGATACCACCAGTGAAACCAGTTTTTCCTCGAGCAGCTCATCGAACTACACTTCCGCCTCTCACTCTCAGACAGATTTTGGCTCAGTTGCATCATCTGCTGCTTTACATTCCTATCCCCTGGCAACACGACGGCATAAAGCTCTCTCGAGTATAGATCAGACCCTTCTAAGCACAAGTCCTAATTTAAGTGAAACTAATCATTTTAGAGGCCAATCTCTAGATCTTGGGAGAAAGAATGCTGATACAAGTTCTTCTAAAAACTCAGATATTGATCATGCTCTAAGCCAGGCCTCTAGTGGCGGAAGCATTTCAGATACTGAatcttccatttgcagtcaaaATTATGCCAAGTATGTGCCACAAGGTACTAAACCTCCAACACCAAATAGGCAGGAAAACTATAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCACAAGGAATGCATGCAGTAGCTCAAACTGAGAACATTGATGCATCACAAAAGCTTAATGAACTAAACAAGAGAAGATCAGAAGAATCCATGAAAATGAAGGAGATTGTTGCTAACGAGGAGATGGCCGAGGAATTAGCAAATcatgagagagagaaatatgAAGCTGCAGCAAGAGAAGCCGAATATCTGAAACAACGTGCAGCAAGAGAAGCTGGAGAAAGAAGAGAAGCTGAGTTAAAAGCTATTCATGCTgtcaaagagaaagaaaagcTTGAGTCTGCTCTGAGTGGTTCCACACCTCAGTACCGAATATTTACGTGGGATGAAATAGTTTCAGCTACTTCGTCTTTCTCTGAAGATCTGAGAATTGGAATGGGTGCATATGGAATTGTGTATAAGTGCACTTTGCATTACACAACTGTTGCTGTTAAAGTTCTTCACTCTAATGGAAACTGCCAAAGCAAGCAATTCCAGCAAGAGTTAGAGATATTGAGCAGAATTCATCATCCAAActtgcttcttcttcttggtGCATGTCCTGATCACGGATGCCTTGTGTATGAATACATGGAAAATGGCAACTTGGAGGATAGACTAATCCAGAAAAACAGTAATAGCCCAATCCCATGGTTTGATAGATTTCGAATAGCTTGGGAAATTGCGTCAGCACTTTCCTTTCTTCACAGCTCGAAGCCGCAACCTATCATCCATCGTGACTTGAAACCGGCAAACATCTTGCTTGGCCATAACCTTGTCAGCAAGATTGGTGATGTCGGTCTTTCTACAATCCTAAATTCAGATGATTTATCTGCCATGTATAAGGACACGGCGCCTGTTGGAACACTCAGCTACATTGATCCGGAGTATCAAAGGAGTGGTTTAATTTCTACGAAATCTGATGTCTATGCTTTTGGATTAGTAATCTTACAGttattgacagcaaaaccagCCATAGCACTTACTCATTTAGTTGAAACAGCTATTGATGGTGGTAATTTAGCAGATGTATTGGATCCAAAAGCAGGATCATGGCCACTACAAGAGACACTAGACGTAGCTCGGTTAGCATTGAGCTGTGCAGAGATGAAGAGTAAGGATCGACCTGATTTGAAAAATCATGTGCTACCAATGCTAAAGAGGTTGAAAGATGTTGCTGATGAGGCTCAAGCTCAATATTCTGCTTCAATAGTTACTATAAAATCCAGAGCTCCCAACCATTTTATATGCCCTATACTTCAGGATGTGATGGATGATCCATGTGTTGCCGCAGATGGATATACATACGATCGCAATGCGATTGAAAAGTGGCTTCAAAAGAATGACAAATCACCGATGACAAATATGGTTGATGGTGCAAACACCAAATTGGAGTGCAACTTACATGCGGTAGATGGTGGTAATCATGATATTGTAAGCAATAAGATGAGAGGGAAAGTTAGAGAGAGAAGCAGAGAAGGAAGCAAACGTGCTTATGGAGGTAAACATCCAGAAGAAATTGGGTACAGGAATAAGGTAGAAAGAACAACATCTTTCTATGTTACAAATTTTCCTGATTCAATCACGGCAACAGAGCTATGGGAGTTGTTCAGCAAATACTGGAAATGCGGAGAGGTATACATTCCAAAAAAGCTGGATAAGGCGGGGAAAAGGTTTGGTTTTGCAAGGTTTGAAGATGTTGAAGATCAACAGAAGCTGCTATCAAAGATAGAAGACACTTGGATAGGAACCTACAAAATAAGGGCAAATCTCCCTAAATTCGGTAGAGGTCAAGGTCCAAAGGAGCACCATGAAGGAAAGGAACATCCCAGGAACCATTGGCAGGACACAAAACACAGGGAAGCAGACATATCATATAAAGAAGTGGCGGTGGGAAAGGGAAGACTGGAAAACACGAAGCAAAGATACGAATCAAGACCCCCACCTTGCAATTTCGGGAGGAGCTCGGAGGAGAGATATAGAGAGGGAGTACTGGAAGTCAAATCAGAACCTGTGAATGTTGCTAAACTGCAAGGGAGTTTCGTAGGGACATTGGGGAAGATGGAAGACACAGAGTGCATCCAAATGACTCTGTGGATGGAAGGGTATCAACAAATCAAAGCCACCTCTTTGGGTATGGATCTGGTGCTCTTATCAACACCAGAGGAAGGAGGGATCCAGAGAGCTTACAAAAGTAATCAAAAATGGTGGGAAAGGTGGTTCACAACTATCAAACCATGGAGACCAGATATACTGCCAAAGGGGAGGAGGACCTGGGTGATGTTATTTGGGGTTCCACTACATATATGGGGCTGGGAAGGTTTTCATAGGATTATCTGGAGAATAGGAAGGTTGCTGAAACTAGATCCGGAGACAATCAATCAAACCAGACTCGATGTAGCAAGGGCTCAAATTGCAATAACTTTTTGGGAGGTGGTGGATGAGATCATCGAGATAAAGGTTAATGAGGAAATTTTTATCATTAGAATGGTGGAAGAAAGGTTTGGAGCTATGGATTTGGGGCTTCACAAGGAATCTGGTTATGCAAATGGGGTGGGAAACTCATCCTATTACTCTGAGAACAATAACGATGGGTTTTCGGTGGTGGGTATGGACGAAGGGTGGACTGAGAATCTATCCGACGGAGAAGGTACGGTGGACCAATCGGTCGGAGGTCCAAGGCTAAAACCATTGGTCTCAAACAAAAGTACGACTGATAAAGTTGTTGGGTCAGTAGCAGCAGAGGAGAGAGAACATGAAAGTACAAAGGCAGAGGAGGAAGGAGGATTTTGTGGGGAAAGTAGGGTGAGGGCAGTCTTGAATTTGGTAAGTAGAGACCCTGGGGAAGACAAACATAGATGGCTAATGTCAGATGTGATGGAAGTGGAGAGAGGAAGAGAGGTGACTAGTGAAGGAAGTAGGAAAGCGTGTTCAGAGATAGGGTTTAGGCAGTTAGGGGAAGACAACGTTGGAGATGGGAGTGTGAATGGattggaatataataataatgctGAGGAGGTTGATATTGGGCCTTTAATTAAAGAAAGTGGGCCCATGCTGGAAAGAGAGGAAGGTGTTTTGGTGGTAGTGGAAAAGGAAAATGCATTACAAAAAGAGGGTTGTTCCAAGTGGGCTTCTGTACAAACAGATCAAGGCCCAACTGGTGTTCTAGAGGAGAATAtgGTTGCAGTGGTGGAAGACTCACAGGAAGATGCAATTTGCAGTAACGATGCAGAATCAATAGAAAGTACAAAAGGGGTTCATCAACAAGAACTGATTCCGATTACGAACCCCCAAGCTGTGTTACAGGAACGGGAAGCATGTTTGGTGTCGGATGATCACGCCAAAGAGGTTAGGATTGAAGCTGAGCGTTTATTCAATATTGGCATGAACCTTGGTGTTAACAGTAATGAAGAAAGAATTCAGACTATAGACAGAATGGTAGAGGCAGAAGATAGAGATGAAGAGAATTTTGCGGTACTGGGGGGGGAGGAGGATAATCAATGA 4479 0.4108 MDRIQEADENNKTSVVALAIKGNKKSKYVVQWALDKFVHEGISIFKLIHVRAVINGVPTPMGDVLPISQVRNDVANAFRREVEWQTNQMVLPFKSLCEQRKVHVDVVVIESDDVATAVAEEVSKNVITKLVLGASSSGIFKSKHKGMSAKISVCTPRFCTVYAVSKGKLSIRQSDMQTDGNIVDDTTSETSFSSSSSSNYTSASHSQTDFGSVASSAALHSYPLATRRHKALSSIDQTLLSTSPNLSETNHFRGQSLDLGRKNADTSSSKNSDIDHALSQASSGGSISDTESSICSQNYAKYVPQGTKPPTPNRQENYNLELEKLRIELRHAQGMHAVAQTENIDASQKLNELNKRRSEESMKMKEIVANEEMAEELANHEREKYEAAAREAEYLKQRAAREAGERREAELKAIHAVKEKEKLESALSGSTPQYRIFTWDEIVSATSSFSEDLRIGMGAYGIVYKCTLHYTTVAVKVLHSNGNCQSKQFQQELEILSRIHHPNLLLLLGACPDHGCLVYEYMENGNLEDRLIQKNSNSPIPWFDRFRIAWEIASALSFLHSSKPQPIIHRDLKPANILLGHNLVSKIGDVGLSTILNSDDLSAMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVILQLLTAKPAIALTHLVETAIDGGNLADVLDPKAGSWPLQETLDVARLALSCAEMKSKDRPDLKNHVLPMLKRLKDVADEAQAQYSASIVTIKSRAPNHFICPILQDVMDDPCVAADGYTYDRNAIEKWLQKNDKSPMTNMVDGANTKLECNLHAVDGGNHDIVSNKMRGKVRERSREGSKRAYGGKHPEEIGYRNKVERTTSFYVTNFPDSITATELWELFSKYWKCGEVYIPKKLDKAGKRFGFARFEDVEDQQKLLSKIEDTWIGTYKIRANLPKFGRGQGPKEHHEGKEHPRNHWQDTKHREADISYKEVAVGKGRLENTKQRYESRPPPCNFGRSSEERYREGVLEVKSEPVNVAKLQGSFVGTLGKMEDTECIQMTLWMEGYQQIKATSLGMDLVLLSTPEEGGIQRAYKSNQKWWERWFTTIKPWRPDILPKGRRTWVMLFGVPLHIWGWEGFHRIIWRIGRLLKLDPETINQTRLDVARAQIAITFWEVVDEIIEIKVNEEIFIIRMVEERFGAMDLGLHKESGYANGVGNSSYYSENNNDGFSVVGMDEGWTENLSDGEGTVDQSVGGPRLKPLVSNKSTTDKVVGSVAAEEREHESTKAEEEGGFCGESRVRAVLNLVSRDPGEDKHRWLMSDVMEVERGREVTSEGSRKACSEIGFRQLGEDNVGDGSVNGLEYNNNAEEVDIGPLIKESGPMLEREEGVLVVVEKENALQKEGCSKWASVQTDQGPTGVLEENMVAVVEDSQEDAICSNDAESIESTKGVHQQELIPITNPQAVLQEREACLVSDDHAKEVRIEAERLFNIGMNLGVNSNEERIQTIDRMVEAEDRDEENFAVLGGEEDNQ 1492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00078 1492 MobiDBLite consensus disorder prediction 243 290 - -
Tsu03g00078 1492 MobiDBLite consensus disorder prediction 921 939 - -
Tsu03g00078 1492 Pfam U-box domain 735 780 IPR003613 GO:0004842|GO:0016567
Tsu03g00078 1492 CDD RRM_SF 844 914 - -
Tsu03g00078 1492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 841 918 IPR000504 GO:0003723
Tsu03g00078 1492 ProSitePatterns Protein kinases ATP-binding region signature. 455 476 IPR017441 GO:0005524
Tsu03g00078 1492 SMART Ubox_2 738 794 IPR003613 GO:0004842|GO:0016567
Tsu03g00078 1492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 567 579 IPR008271 GO:0004672|GO:0006468
Tsu03g00078 1492 Coils Coil 406 426 - -
Tsu03g00078 1492 SUPERFAMILY RING/U-box 733 781 - -
Tsu03g00078 1492 Gene3D - 805 950 IPR012677 -
Tsu03g00078 1492 Pfam Domain of unknown function (DUF4283) 1022 1129 IPR025558 -
Tsu03g00078 1492 ProSiteProfiles U-box domain profile. 734 779 IPR003613 GO:0004842|GO:0016567
Tsu03g00078 1492 SMART rrm1_1 842 914 IPR000504 GO:0003723
Tsu03g00078 1492 MobiDBLite consensus disorder prediction 916 939 - -
Tsu03g00078 1492 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 12 780 - -
Tsu03g00078 1492 CDD STK_N 15 167 - -
Tsu03g00078 1492 SUPERFAMILY RNA-binding domain, RBD 838 926 IPR035979 GO:0003676
Tsu03g00078 1492 Coils Coil 315 402 - -
Tsu03g00078 1492 SMART serkin_6 449 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00078 1492 SUPERFAMILY Protein kinase-like (PK-like) 430 703 IPR011009 -
Tsu03g00078 1492 Pfam Protein tyrosine and serine/threonine kinase 454 704 IPR001245 GO:0004672|GO:0006468
Tsu03g00078 1492 ProSiteProfiles Protein kinase domain profile. 449 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00078 1492 PANTHER OS02G0152300 PROTEIN 12 780 - -
Tsu03g00078 1492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 733 782 IPR013083 -
Tsu03g00078 1492 Gene3D Phosphorylase Kinase; domain 1 427 521 - -
Tsu03g00078 1492 MobiDBLite consensus disorder prediction 1201 1231 - -
Tsu03g00078 1492 MobiDBLite consensus disorder prediction 807 827 - -
Tsu03g00078 1492 CDD RING-Ubox_WDSUB1_like 739 779 - -
Tsu03g00078 1492 Gene3D Transferase(Phosphotransferase) domain 1 522 732 - -
Tsu03g00078 1492 MobiDBLite consensus disorder prediction 179 205 - -
Tsu03g00078 1492 Gene3D HUPs 6 146 IPR014729 -
Tsu03g00078 1492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 844 911 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00078 Tsu-Chr3 642912 651687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00078 15 779 U-box Gene Family AT4G25160 51.186 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tsu03g00078 PK_Tyr_Ser-Thr 3.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00078 - - gsj:114409387 1125.92