Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00069 ATGATCAATGTATTTGTCCTTCTTAATCTTTGTCTCAAGGCTATGTTTTTCGCGGACTTGTATCCTTCTGAAACTCGTAAATTGATCGAGCGTCTCGTTAATTATGTCATTTACAAGGGGACATTTCTTCCATTGATTGTGCCACCAACACTTTATCAGGCAGGTCTTTGGTCAACTTGGTTGGCCGTGCTTTGTTCTTTAAAgATGTTTCAAGCTCTGGCTAGAGATCGATTGGAGCGACTGAATGCATCTCCATCTGCCACACCATGGACATATCTTCGTGTATATTCAGCATTGTTATTCATTTTCTTGGTCGATGTTCTCTGGATAAGGTTTTGTCTTTCGATATATAGAACACATGGGTCGTCTATGTTTCTCTTACTATTCTTTGAGCCTTTAAGTATTGCTTTCGAGACCCTACAGGCCATTTTGGTACATGGATTTCAGTTGCTTGACATATGGATTCATCATTCGGCTTGCAGTAGCAGTGATTTCCGAACACCTAAACTGCTTGACTCATTAACTGCAGGTTCTTTATTGGAATGGAAAGGAGTTCTTATCCGAAACTTAGGATTTTTCCTGGATATGGCAACATTTTTTATGGCACTTGGTCATTACTTGTATATATGGCGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCATTACTTAGTGCAATAATAAATCGTGTAAAAGGCTTTATTAGGCTAAGGATAGCTCTAGGAGCACTTCATGCAGCTCTTCCCGATGCAACAACCGAGGAGCTAAGAGCATATGACGATGAATGTGCTATTTGTAGAGAACCCATGGCTAAGGCTAAAAAGCTAAACTGCAATCACCTCTTCCATCTAGCATGTTTAAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTACACTTGTCCAACATGCCGAAAGCCACTTTTTGCAGGTCGCCCAGAAAATGAAACTAGCGCAAGTACAGGGGTAATATCCAGTGATGAGCAACTTGCACGCCAAATAAGTGCAGGATTTGATCGTCAAAACTCGGCTAGACATACCATGCCAGCTGGATTGTTTCCAAATCAGACACCCAACAATGCCGATGGTGTTCCTTGGAGGGGTGCAGGACTGGACTCGGGATGGTTGCATTCTTGGCCAAATCAGGGTGTTGATGGTGGTGCCGGTCCATCTACTGGTATCAGAACAGTAGGTCTCGGCAGAGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAACCTATGCTCAGACcacctttgatgatgcttcttGGAACCTTTGGCCTATTAATCCGTCTCAGGCTTCTACAAGTGGTCCAACTCCGACGACCATTCCTTCCCCCGGTGTAAGATTGCCAGGAGGAAATGGTGGTTTACATATAAGGACTCCTTCACGATCTGGAAATGATAATGTAGCAAATGTACTTGCTATGGCTGAGACTGTTCGAGAGGTTCTACCTCATATTCCAGATGACATAATATTCCAGGACTTGCAGCGAACAAATTCTGTCACAGTTACTGTGAATAATCTTCTCCAAATGTGA 1572 0.423 MINVFVLLNLCLKAMFFADLYPSETRKLIERLVNYVIYKGTFLPLIVPPTLYQAGLWSTWLAVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFIFLVDVLWIRFCLSIYRTHGSSMFLLLFFEPLSIAFETLQAILVHGFQLLDIWIHHSACSSSDFRTPKLLDSLTAGSLLEWKGVLIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIINRVKGFIRLRIALGALHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGRPENETSASTGVISSDEQLARQISAGFDRQNSARHTMPAGLFPNQTPNNADGVPWRGAGLDSGWLHSWPNQGVDGGAGPSTGIRTVGLGRVQMMMRHLASVGETYAQTTFDDASWNLWPINPSQASTSGPTPTTIPSPGVRLPGGNGGLHIRTPSRSGNDNVANVLAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00069 523 CDD RING-H2_synoviolin 268 313 - -
Tsu03g00069 523 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 2 523 - -
Tsu03g00069 523 Pfam Ring finger domain 269 313 IPR001841 -
Tsu03g00069 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 320 IPR013083 -
Tsu03g00069 523 Pfam CUE domain 487 523 IPR003892 GO:0043130
Tsu03g00069 523 CDD CUE_RIN3_plant 484 521 IPR035667 -
Tsu03g00069 523 Gene3D - 482 522 - -
Tsu03g00069 523 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 523 - -
Tsu03g00069 523 ProSiteProfiles CUE domain profile. 483 523 IPR003892 GO:0043130
Tsu03g00069 523 ProSiteProfiles Zinc finger RING-type profile. 271 313 IPR001841 -
Tsu03g00069 523 SMART ring_2 271 312 IPR001841 -
Tsu03g00069 523 SUPERFAMILY RING/U-box 258 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00069 Tsu-Chr3 569694 575938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00069 2 330 C3H Transcription Factor Family AT3G16090 29.859 6.81e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00069 K10636 - gmx:100820578 932.939