Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00063 ATGGCCAACATTTTTCCTAAGATATTGTTTGTTATTATTCTCAATCTACTATTGTTATTCTCACAATTATCCACCGCAATTGATACAATCACCCAATATCAATCTCTTAATGATGGCAATACCTTGGTGTCTAGTGATAAAACTTTTGAGTTAGGCTTCTTTAGACCAGGTAGTTCAACAAATCGCTATGTTGGAATATGGTACAAAAACATCCCAAATAGAAGAATAGTTTGGGTTGCAAACCGTGATAATCCAATCAAAGACAACAATTCAAACTCAACCATGTTGGTTATAAGCAAAGAGGGAAATCTTGTTCTACTTACCAACAACAATCAAACTCTTGTTTGGTCAACAAACATCACAACACAATCATTGTCTAATACAACTTCTCATGTAGCTCAATTATTAGACACTGGAAACCTTGTAATCAAAGACAACAACAATGGTGATCAACAAAGTAATAATTTCCTATGGCAAGGTTTTGATTTTCCTTGTGATACTTTATTGCCGGATATGAAGCTTGGATGGGACTTAAAATCCGGTCTAAATCGTCAATTAACCTCTTGGAAAAATTGGGATGATCCGTCTTCGGGAGATTTGACTTGGGGTACGGTTCTTAGTAGTAATCCAGAAATTGTATTGAAAAAAGGGTCGATTGAAATTCATAGAAGTGGCCCTTGGAATGGAGTTGGATTTAGTGGAGCACCTGTCGAGGTTATTACTTCAACCATTGTAATTACAAAAGCTATAAACAATTCGGATGAAGTTTATTACTCATATAGTCTAGTCAACACGAGTGTGATTTCATTAACTTATTTGAATCAAACACTTGATCATCGTCAACGCATTGCATGGAATCTAGAGGAGAGTGCTTGGAACGTTTATGAGTCTGTGCCAAGCGATTATTGTGATGAATATAATCATTGTGGTCCTTATGGAAGTTGTGTTCATAACGAATCTCTAAGTACTTGTTTGTGTTTAGATGGGTTTGAACCTAAATCATCACAAAATTGGAACACATTTAATTCGACACAAGGATGTGTGCGCAAAGGTGAAGATACTTGTGGTATGAATGATAATTTTCAAAGATTTTATGGATTGAAATTGCCCGAAACGAAACATACTTGGGTTGATGCTAATATGACACTTGATGAATGTAAGAATAAATGCTTGGCGGATTGTTCTTGCACGGCTTATTCAAACTTGGATGTGGGTGGAGATGGTAGTGGTTGTTGTATTTGGTTTGGTGATTTGATTGATTTAAAACAGATCTCATCATTCCAACAATATCTATATATTCGAACGGATGATTCTACTGTAGGTGGGCATAACAATAAGAAGACATTGACAATAGCAATTACTATTCCATTGGTCATTGTTTTTCTACTCATGATCATAGTATTCTAcatttacaaaaaaagaaagcaacAAAGAGCTGAAGAGGAAGATGAGGACCAACAAGATTTTGACCTTCCTTTCTTCAGTTTTTCTACAATGATTAGTGCCACAAATGACTTCTCAAACTATAACAAACTTGGAGAAGGTGGGTTTGGACCAGTATATAAGGGTACCCTAACTACAAATGGGCAAGAAATTGCGATCAAAAGGCTTTCAGGAAGTTCAAGACAAGGatcaaaagaatttaaaaatgaagttaTATTATGTGCAAAACTTCAACACCGAAATTTAGTTAAGGTTCTTGGTTGTTGCAttcaaggagaagagagaatgCTTGTCTATGAATATATGCCCAACAAAAGCTTAGATTCATTTCTTTTTGATCCGGCCCAAAAGAAACTTCTAGATTGGAGCACGCGCTTTAACATCATATGCGGAGTTGCTCGTGGACTTATTTATCTTCATCAAGATTCTAGATTGAGGATCATACATAGAGATCTAAAACCAAGTAATATTTTATTAGACAATGATATGAATCCAAAAATATCAGATTTTGGCTTGGCAAAAATTTGTGGAGATGATCAAGttgaaggaaaaacaaaaagagtagTTGGAACACATGGTTATATGGCTCCTGAATATGCCATCGACGGGTTATTCTCCACAAAATCTGATGTATTTAGCTTCGGCATATTATTGCTAGAGATTGTGAgtggaaagaaaaataaaggactTACATATCCAAGCAACAACCATAATCTTGTTGAGCATGCTTGGAGATTGTGGAAAGAAGGTAGCTCAAAAGAATTGGTTGATGATTGTTTCGGGGACTCATATATTCTATCTGAAGCCTTACGTTGCATACAAGTTGGTCTTTTATGTCTACAACAACATCCAAATGATAGACCTAATATGGTATTAGTGCTTGCGATGTTGACGAATGAAACCATCTTAGCTCAGCCAAAGGAACCCGGTTTCATAATAAAAAGGGTCTCTCCTGAAGGAGAATCTACATCAGAAAATGTAATGTCTTCCTCAATCAATGAAGTCACTATTTCGTTATTGGATGctagatga 2475 0.3434 MANIFPKILFVIILNLLLLFSQLSTAIDTITQYQSLNDGNTLVSSDKTFELGFFRPGSSTNRYVGIWYKNIPNRRIVWVANRDNPIKDNNSNSTMLVISKEGNLVLLTNNNQTLVWSTNITTQSLSNTTSHVAQLLDTGNLVIKDNNNGDQQSNNFLWQGFDFPCDTLLPDMKLGWDLKSGLNRQLTSWKNWDDPSSGDLTWGTVLSSNPEIVLKKGSIEIHRSGPWNGVGFSGAPVEVITSTIVITKAINNSDEVYYSYSLVNTSVISLTYLNQTLDHRQRIAWNLEESAWNVYESVPSDYCDEYNHCGPYGSCVHNESLSTCLCLDGFEPKSSQNWNTFNSTQGCVRKGEDTCGMNDNFQRFYGLKLPETKHTWVDANMTLDECKNKCLADCSCTAYSNLDVGGDGSGCCIWFGDLIDLKQISSFQQYLYIRTDDSTVGGHNNKKTLTIAITIPLVIVFLLMIIVFYIYKKRKQQRAEEEDEDQQDFDLPFFSFSTMISATNDFSNYNKLGEGGFGPVYKGTLTTNGQEIAIKRLSGSSRQGSKEFKNEVILCAKLQHRNLVKVLGCCIQGEERMLVYEYMPNKSLDSFLFDPAQKKLLDWSTRFNIICGVARGLIYLHQDSRLRIIHRDLKPSNILLDNDMNPKISDFGLAKICGDDQVEGKTKRVVGTHGYMAPEYAIDGLFSTKSDVFSFGILLLEIVSGKKNKGLTYPSNNHNLVEHAWRLWKEGSSKELVDDCFGDSYILSEALRCIQVGLLCLQQHPNDRPNMVLVLAMLTNETILAQPKEPGFIIKRVSPEGESTSENVMSSSINEVTISLLDAR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00063 824 Pfam D-mannose binding lectin 76 190 IPR001480 -
Tsu03g00063 824 SMART ntp_6 356 435 IPR003609 -
Tsu03g00063 824 ProSiteProfiles EGF-like domain profile. 299 336 IPR000742 -
Tsu03g00063 824 Pfam Domain of unknown function (DUF3403) 779 824 IPR021820 GO:0004674
Tsu03g00063 824 SMART serkin_6 506 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00063 824 Gene3D - 21 160 IPR036426 -
Tsu03g00063 824 CDD B_lectin 34 164 IPR001480 -
Tsu03g00063 824 ProSiteProfiles PAN/Apple domain profile. 355 437 IPR003609 -
Tsu03g00063 824 ProSiteProfiles Protein kinase domain profile. 506 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00063 824 Pfam S-locus glycoprotein domain 223 334 IPR000858 GO:0048544
Tsu03g00063 824 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 35 817 - -
Tsu03g00063 824 ProSiteProfiles Bulb-type lectin domain profile. 27 156 IPR001480 -
Tsu03g00063 824 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 35 817 - -
Tsu03g00063 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Tsu03g00063 824 SUPERFAMILY Protein kinase-like (PK-like) 488 797 IPR011009 -
Tsu03g00063 824 PIRSF SRK 1 824 IPR024171 GO:0004674
Tsu03g00063 824 Pfam Protein tyrosine and serine/threonine kinase 509 740 IPR001245 GO:0004672|GO:0006468
Tsu03g00063 824 CDD STKc_IRAK 512 780 - -
Tsu03g00063 824 Gene3D Transferase(Phosphotransferase) domain 1 583 789 - -
Tsu03g00063 824 CDD PAN_AP_plant 354 435 - -
Tsu03g00063 824 Gene3D Phosphorylase Kinase; domain 1 467 582 - -
Tsu03g00063 824 SMART blect_4 33 164 IPR001480 -
Tsu03g00063 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 195 IPR036426 -
Tsu03g00063 824 Pfam PAN-like domain 355 421 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00063 Tsu-Chr3 526775 541382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00063 449 803 Receptor kinase-like Gene Family AT4G23190 53.134 5.35e-127 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g00063 PK_Tyr_Ser-Thr 8.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00063 - - mtr:MTR_3g007630 1343.18