Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00044 atggcGGAGGTAATTAACTTACCTCCTGAATCTCACGACCGATCTCCCACTACTGCTGCTTctcatcctcctcctcctcccgCCGACGATGATCTCCCACCTCCACCTAACCCTCGTCGGAGAGATTTCGACCGCCGTGACGACAGAGATTTCGACCGCCGTCCTCACCGTGGTGGTAGAGGTGGCCGAGGTGGTTACTACAATCGTGATAGAGACTTCAAGCGCCGTCGTAGTCCTAGCCCTAATTATCGTGACCGCCGCTATTCTCCTCCTCATCCGCAATCTAGGAGGTCACCTCCGCCTTATAAGAGATCCAGAAGGGGTAGTCCCCATGGACCCAACGACAGATTTGGCTATGATCACTTTGGTGGCTATGAACGTGGAGTGGGTGGAAGGGGTGGTTATGCAGATGATAGATCTGGTGGCAGGTTTCCACATCGATCTGCAGGGGGATATCAAAACGGAATTTCTGATCTGGATGCCAATCGCGGTTATGCAGATCTGCCAAGTGGAGGTGCTCGAAGAGAGGGGTTAATGTCCTATAAGCAATTCATTCAGGAGCTTGAAGATGACATACTGCCATCTGAAGCTGAGCGTAGATACCAAGAGTACAAATCAGAGTATGTTACTACTCAAAAGCGTGCTTATTTCAATGCTCACAAAGATGAGGCATGGTATGCGTTGAAAGACAAATATCATCCAACAAATTTACTGACAGTAATTGACAGGAGGAATGAAAATGCTCGACGTCTGGCAAAGGATTTTTTGCTTGATTTGCAAAGCGGAACACTAGATATAAATCCGGGTTTAAACTCTGCATCCGCTAGATCAGAGCAAGCCAGCGAGCCAAATTCAGAGGAGGAAACAGATGCCGGCGATAAACGAAGAAGACATGGTAGGGGATCTAATAAGGATAATGACTTCTCTGCTGCTCCAAAGGCTCACCCTGTCAGTTGTGAACCTAAAAGGATACAAGTAGATATTCATCAGGTTCAGGCTGTTGTTCGTAAGCTTGACAAGGAAAAAGGGATTGAAGATAATATTTTAACCACCAGTGATCATAGTAAAAATAGTGATAAGTCTCACAGCGGATCTGTGGGGCCCGTAATTATAATTCGTGGCCTAACATCTATTAAAGGCTTAGAGAGTGTTGAGCTACTGGACACACTTATAACATATCTATGGCGGATTCATGGTGTAGATTATTATGGAATGCTTGAGATTAACGATGCCAAGGGTTTTAGGCATGTAAGACCAGAAGGATCAAGGCATGAAGAAACAGGTAAAACAGGGTCAGAATGGGAGAAGAAACTTGATTCATTTTGGCAGAGAAGGTTGGACGGCCAGGATCCCTTGGAAGTAAGGACTGCAAAGGAGAAGATAGATGCTGCAGCAGCTGACATGTTGGATCCATATGTTAGAAAAATTAGGGATGAAAAGTATGGATGGAAGTATGGCTGTGGAGCCAAGAGTTGCACAAAGCTTTTTCATGCGGTTGAGTTTGTTTACAAACATCTCAAGCTAAAACACCCAGAGCTTGTGTTGGAACTAACATCAAAATTGCGTGAAGatctttattttcaaaattacatGAATGATCCTGATGCTCCTGGTGGAACACCTGTCATGCAGCAAACTCAGAAGGACAAGTCTTTAAAGCGAAGATTACTGGATGGCCGATTGAAAGATGATCGTGGGAATCGGCGAGACCAGGATAGGAGTGACAGAACAAATGGAGATAGGCCTGACAGTTCTCCATCTCGTGAAAGGCAGTTGGGAAACCGTGATGACACAATGTTTGATGCATATGGTGGGTCTGCTGTACCAACATTCACCGCGGATATGCCCCCTCCTCCTTCAGTTTTGATGCCTGTACCTGGTGCTGGGCCTTTGGGACCATTTGTTCCTGCTCCACCGGAAGTTGCGATGCAGATGTTTAGGGACCAAGGACCTTCATTTGATCCATCAGGAATGACAATACGTTCTGGTCCTCACATAGGTGGACAAGCCTCTATGATTGCTGTTCCTTCTGCCTTTAGACCTGATCCTCGACGGATGCGGAGTTATCAAGATTTGGATGCCCCGGAAGAAGAAGTTACTGTCATTGACTATCGGAGCTTTGTCGCCGGTCTTTATGATTATGGTCCTCCTGGTTGCACCGTTAAATACAATGTCCTCTCCCTCTGGCGTCAGCCTTTTGTTTTGGAGGAAAACATACTTGAAATTGATTGTTCATGCTTGACGCCGGAGGATGTTCTGAAGGCTTCTGGCCACGTGGAAAAGTTCACCGATATCATGGTGAAGGACGAGAAAACCGGCATGTGTTACCGTGCTGATCACTTGGTCAAGGAGTATTGCAATGAGAAGCTTAAAAAGGATCTCACATTGTCATCAGAAAAAGCTACTGCCGAAGCTGAAGAACTCAAACAAGTGCTTGCCGTGCTAGATGAATACTCATATCAAGAACTTGGTGATATGATTAACAAGTATGGTATCACTGCTCCTGAAACCAAGAACCAACTGTCTGATCCTTACCCTTTCAATTTGATGTTTCAAACTTTCATTGGTCCCTCCGGCTTAGCTCCTGGGTTTATGCGTCCCGAAACTGCACAGGGTATATTTGTTAATTTCAAAGAATTGTATTATTACAATCGAAACAAGCTACCCTTTGCTGCTGCACAAATTGGAAATGCTTTTAGAAATGAGATATCTCCCCATCAAGGCCTTCTCAGAGTCCGTGAATTCACCTTGGCAGAAATTGAGCACTTTGTTGACCCCCAAGATAAGTCTCATCCTAAGTTTGCCGAAGTTGCCAACTTGGAGTTTTTCATGTTCCCGAGGGATGAACAGCGTTCTGGTCAGTCTGCAAAGGGAATCCGTCTTGGTGAAGCTGTTTCAAAGGGTATTGTCAATAATGAGACTCTTGGTTATTTCATTGGAAAAAATTTCTCTGATCCTCAAACTAAGGAAAGTGGAGTTTCACTGGCGGCTCatgaaaaaatagaacaaaaggAAATGGAGaAATTGGTTATAACTCCCATAAAGAAAGAATTGGGCCTGGCATTACAAGGTAGTCAGAAAATGGTGGTTGAAGCACTTGAGGCAATGCATGAGAAAGAAGCATTGGATATGAAGGCTGCTCTGGAATCAGAAAAAGGGGAGGTTGAGTTTGAAGTGTGTAAGCTTGGGAAAACTAAACAAGAGGAGATAGAAGCTCAGCCTGCTAATGTGATTGCAAAGCAAGAGACTATGGAGGTTCAGCTTAAGAGTCTTGTTGCTAAACAAGATGAAATGAGATCAGATATCAAGGCCCTTCTAGAAGTCTTGAAGAATATACCCtag 3342 0.439 MAEVINLPPESHDRSPTTAASHPPPPPADDDLPPPPNPRRRDFDRRDDRDFDRRPHRGGRGGRGGYYNRDRDFKRRRSPSPNYRDRRYSPPHPQSRRSPPPYKRSRRGSPHGPNDRFGYDHFGGYERGVGGRGGYADDRSGGRFPHRSAGGYQNGISDLDANRGYADLPSGGARREGLMSYKQFIQELEDDILPSEAERRYQEYKSEYVTTQKRAYFNAHKDEAWYALKDKYHPTNLLTVIDRRNENARRLAKDFLLDLQSGTLDINPGLNSASARSEQASEPNSEEETDAGDKRRRHGRGSNKDNDFSAAPKAHPVSCEPKRIQVDIHQVQAVVRKLDKEKGIEDNILTTSDHSKNSDKSHSGSVGPVIIIRGLTSIKGLESVELLDTLITYLWRIHGVDYYGMLEINDAKGFRHVRPEGSRHEETGKTGSEWEKKLDSFWQRRLDGQDPLEVRTAKEKIDAAAADMLDPYVRKIRDEKYGWKYGCGAKSCTKLFHAVEFVYKHLKLKHPELVLELTSKLREDLYFQNYMNDPDAPGGTPVMQQTQKDKSLKRRLLDGRLKDDRGNRRDQDRSDRTNGDRPDSSPSRERQLGNRDDTMFDAYGGSAVPTFTADMPPPPSVLMPVPGAGPLGPFVPAPPEVAMQMFRDQGPSFDPSGMTIRSGPHIGGQASMIAVPSAFRPDPRRMRSYQDLDAPEEEVTVIDYRSFVAGLYDYGPPGCTVKYNVLSLWRQPFVLEENILEIDCSCLTPEDVLKASGHVEKFTDIMVKDEKTGMCYRADHLVKEYCNEKLKKDLTLSSEKATAEAEELKQVLAVLDEYSYQELGDMINKYGITAPETKNQLSDPYPFNLMFQTFIGPSGLAPGFMRPETAQGIFVNFKELYYYNRNKLPFAAAQIGNAFRNEISPHQGLLRVREFTLAEIEHFVDPQDKSHPKFAEVANLEFFMFPRDEQRSGQSAKGIRLGEAVSKGIVNNETLGYFIGKNFSDPQTKESGVSLAAHEKIEQKEMEKLVITPIKKELGLALQGSQKMVVEALEAMHEKEALDMKAALESEKGEVEFEVCKLGKTKQEEIEAQPANVIAKQETMEVQLKSLVAKQDEMRSDIKALLEVLKNIP 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00044 1113 MobiDBLite consensus disorder prediction 266 322 - -
Tsu03g00044 1113 MobiDBLite consensus disorder prediction 1 163 - -
Tsu03g00044 1113 MobiDBLite consensus disorder prediction 266 280 - -
Tsu03g00044 1113 MobiDBLite consensus disorder prediction 34 83 - -
Tsu03g00044 1113 PRINTS Glycyl-tRNA synthetase signature 845 857 - -
Tsu03g00044 1113 PRINTS Glycyl-tRNA synthetase signature 864 881 - -
Tsu03g00044 1113 PRINTS Glycyl-tRNA synthetase signature 896 913 - -
Tsu03g00044 1113 PRINTS Glycyl-tRNA synthetase signature 913 923 - -
Tsu03g00044 1113 PRINTS Glycyl-tRNA synthetase signature 704 718 - -
Tsu03g00044 1113 Gene3D - 765 844 - -
Tsu03g00044 1113 MobiDBLite consensus disorder prediction 548 596 - -
Tsu03g00044 1113 Pfam Arsenite-resistance protein 2 427 607 IPR007042 -
Tsu03g00044 1113 ProSitePatterns Zinc finger C2H2 type domain signature. 487 510 IPR013087 -
Tsu03g00044 1113 MobiDBLite consensus disorder prediction 281 304 - -
Tsu03g00044 1113 Gene3D Bira Bifunctional Protein; Domain 2 698 1008 IPR045864 -
Tsu03g00044 1113 SUPERFAMILY Class II aaRS and biotin synthetases 702 939 IPR045864 -
Tsu03g00044 1113 Coils Coil 791 811 - -
Tsu03g00044 1113 PANTHER SERRATE RNA EFFECTOR MOLECULE-LIKE PROTEIN 1 706 - -
Tsu03g00044 1113 MobiDBLite consensus disorder prediction 19 33 - -
Tsu03g00044 1113 Gene3D - 1010 1080 - -
Tsu03g00044 1113 MobiDBLite consensus disorder prediction 532 600 - -
Tsu03g00044 1113 Pfam SERRATE/Ars2, N-terminal domain 182 265 IPR021933 -
Tsu03g00044 1113 PANTHER ARSENITE-RESISTANCE PROTEIN 2 1 706 IPR039727 GO:0006397
Tsu03g00044 1113 TIGRFAM glyS_dimeric: glycine--tRNA ligase 708 981 IPR002315 GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426
Tsu03g00044 1113 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 865 938 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00044 Tsu-Chr3 383366 395799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00044 83 707 C2H2 Transcription Factor Family AT2G27100 60.676 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00044 - - gmx:100811300 1026.16