Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00041 ATGGCGCTAGGAAGCGAGGACAGTGATAGAAATGATGCTGTTTCCGCCACTGCGAGACAACAATTGACTATCTCCACCGGAACCTTAACATCTCCGCCACCACAATTCACACTTCCGTTGGATGTGGTCGCTGAAATCTTTTGTAAGTTACCGGTGAAGATTCTCTTTCAACTTCAATGTGTTTGCAAGTCATGGAAATCACTAATCACTGATCCagaatttgtgaaaaaatacCTTCGCAAGTCAAGTAGGATTGAAGTAATGGAATCTTCATTGATCAATAAGCCAATGAGAAAGACATCGAGTTCAAATTTATTGCCTATGGCTAGGAGAGGTCTTGGATCCAAGGGAAGCAAGATACCTCTCTTAGCTAACCATTTTAGAGTTGGTCTAAACATTAGTGATAACTACTTCTATCACTATAATGTTGCTTTATATTTTCAAGATGGACAGCCGGTTGAAGTGAAAGGTATTGGGAGAAAGGTCATAGACAAACTTTGTGAAACATACGATGTATTAAGAAACAAGAATTTTGCATATGATGGCGAGAAAAGTTTATTCACTCTTGGTTCTCTACTTCATACTAAGCAGGAATTCATCGTTGTATTAGACGAAGTTTCATCAATGAGGGTTGGGAGAAACCCTGATGATGCAACCAAGAGAATTAAGCGTCAATCTCGGTCCAAAACTTTTAAGGTTGAGATTAGTTATGCGGCCAAAATTCCATTGAAAGCAATTACAAATGCAATACAAGGTCAGGAATCTGAGCAATATCAAGAAGCATTGAGGGTTCTTGACATTATATTGAGGCAGAATGCAGCGAAGCAGGGATGTCTCCTTATTCGTCAGTTTTTCTTTCATGAAAATCCGAGGAATATTACTAACCTTGGTGGTGGTGTTCAATGTTGTCGCGGTTTCCATTCAAGTTTTAGAGTCACACAAAGAGGTTTATCTCTCAATGTTGatgtGTCAAATACATTACTTGTAAAGCCTGGCCCTCTAGTCGACTTTCTTCTCGAGAACCAGAATGTTCAACAACTAAAATTCATTGATTGGTCCAAGGCAAAAAGAATGCTGAAAAATCTTAGAATTAAGGCTAACAATAGAGAGTTCAAAATCACTGGACTGAGTGAGAATCCCTGCAGAACACAAAAATTTTTATTGAAACATGGTAAGGATGTTCATGGTGAAGCGCGATCACATGAAATCACAATTTATGAATACTTCAAACATCACAAAAAGATCGAACTGGATTATTCTGCTGATATGCCATGCATCAATGTTGGCAAACCAAATAGTCCAACTTATTTTCCTATAGAGCTATGCACAATGGTCTCGTTGCAGCGATACACTAAGGCACTGTCAAATAAGCAAAGAGCACAATTGGTGTTGGAGTCAAGAACAAATCCACATGAAAGGAAAGAAGCTTTGCAACATTCATTACGAAACAACAAATATGGCGATGAGCCTATGCTTTGTTCTTCTGGGATTACTATCGAACCTTTCTTTATTCATGTCGAAGGTCGTGTGTTGCAAGCTCCAACACTTGTATTTGGAAAAGGGAATAAATTTTGTCCTCGGAATGGGAGTTGGAATTTCAACGATAAGAAACTAGTTGAACCGGTGAAAATTGAACGTTGGGCAATAGTAAACTTCTCATCTCGGTGTAATATAAATCATTTGTTGAATCTCATTAAAAAGAATTCTGAATTTAAAGGGATGGACTTAAATCCTCCGTTTGACATATTTGAAGAGGATGGTCGCCACAGAAGTGAGTCGGCATCTTTCAGGGTTGACAAAATGTTTGATATCGTGATGGCCAAGCTGCCTGGACCCCCTCAACACCCTTCAGCTCAACTTCTGTTATGTATTCTTCCATTTGCCAAGAATTGTGAGATTTATGGTCCTTGGAAAAGGAGGTGTCTTGTTGATGCAGGAATTCCAACTCAATGTATTGCTCCTCCAGCAAAAATTAATGATCATTATATTACTAATGTTCTCTTGAAAATTAATGCCAAGCTTGGGGGGATGAATTCCTTTTTGTTAACTGAATCTCAGCATTCTATACCATTGGTTTCCAACATACCTACACTGATTATTGGAATGGATGTTTCACATGGATCTCCAGGTCAATGTGATGTACCGTCCATTGCTGCGGTTGTGAGCTCGAGATATTGGCCTCAAATTTCCCGTTATAGAGCTGCTGTCCGTACACAGCCATCAAAAGTAGAGATGATTACATCTCTATTCAAAGATGATGGTATCATCAGTGAGATGCTTAAGGACTTCCATGCAACTTCGAGAGCGAAGCCTCAACAAATCATAATATTCAGGGATGGAGTGAGCGAATCGCAGTTTAACCAGGTCCTCAACATTGAATTGGATGAAATCATAAAGGCATGCAAACATTTTGATGAAAGTTGGTGTCCAAAGTTTactttgattgttgctcagaagAATCACCATACTAGGTTCTTTAAAGCCAATGCTCCTCAAGAAAATGTTTCACCTGGAACTGTTATTGATAACAATATATGTCATCCTAAAAACAATGACTTCTACTTGTGTGCTCATGCTGGCAAGATTGGTACAACTCGTCCTACTCATTACCATGTTTTATACGATGAAATTGGATTCTCACCAGATAATTTGCAAGAACTAGTACATTCTCTATGTTATGTgTACCAAAGGAGCACAACTGCTATATCAATAGTTGCTCCAATTTATTATGCTCACCTAGCAGCTGCTCAGATAGCAcagtttataaaatttgatgacacaAAGACTCTTTCCAGCAGCCACAATGAATCAACTTCTGTTGTACCTGCATTACCACGTCTTCATGAACAAGTCACCGATACTATGTTCTTTTGTTAA 2877 0.3803 MALGSEDSDRNDAVSATARQQLTISTGTLTSPPPQFTLPLDVVAEIFCKLPVKILFQLQCVCKSWKSLITDPEFVKKYLRKSSRIEVMESSLINKPMRKTSSSNLLPMARRGLGSKGSKIPLLANHFRVGLNISDNYFYHYNVALYFQDGQPVEVKGIGRKVIDKLCETYDVLRNKNFAYDGEKSLFTLGSLLHTKQEFIVVLDEVSSMRVGRNPDDATKRIKRQSRSKTFKVEISYAAKIPLKAITNAIQGQESEQYQEALRVLDIILRQNAAKQGCLLIRQFFFHENPRNITNLGGGVQCCRGFHSSFRVTQRGLSLNVDVSNTLLVKPGPLVDFLLENQNVQQLKFIDWSKAKRMLKNLRIKANNREFKITGLSENPCRTQKFLLKHGKDVHGEARSHEITIYEYFKHHKKIELDYSADMPCINVGKPNSPTYFPIELCTMVSLQRYTKALSNKQRAQLVLESRTNPHERKEALQHSLRNNKYGDEPMLCSSGITIEPFFIHVEGRVLQAPTLVFGKGNKFCPRNGSWNFNDKKLVEPVKIERWAIVNFSSRCNINHLLNLIKKNSEFKGMDLNPPFDIFEEDGRHRSESASFRVDKMFDIVMAKLPGPPQHPSAQLLLCILPFAKNCEIYGPWKRRCLVDAGIPTQCIAPPAKINDHYITNVLLKINAKLGGMNSFLLTESQHSIPLVSNIPTLIIGMDVSHGSPGQCDVPSIAAVVSSRYWPQISRYRAAVRTQPSKVEMITSLFKDDGIISEMLKDFHATSRAKPQQIIIFRDGVSESQFNQVLNIELDEIIKACKHFDESWCPKFTLIVAQKNHHTRFFKANAPQENVSPGTVIDNNICHPKNNDFYLCAHAGKIGTTRPTHYHVLYDEIGFSPDNLQELVHSLCYVYQRSTTAISIVAPIYYAHLAAAQIAQFIKFDDTKTLSSSHNESTSVVPALPRLHEQVTDTMFFC 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00041 958 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 100 957 - -
Tsu03g00041 958 SMART Piwi_a_2 620 923 IPR003165 GO:0003676
Tsu03g00041 958 Gene3D - 510 682 - -
Tsu03g00041 958 SUPERFAMILY Ribonuclease H-like 617 921 IPR012337 -
Tsu03g00041 958 ProSiteProfiles F-box domain profile. 32 78 IPR001810 GO:0005515
Tsu03g00041 958 Gene3D - 36 92 - -
Tsu03g00041 958 ProSiteProfiles PAZ domain profile. 369 446 IPR003100 GO:0005515
Tsu03g00041 958 SUPERFAMILY PAZ domain 326 486 IPR036085 GO:0005515
Tsu03g00041 958 Pfam PAZ domain 335 462 IPR003100 GO:0005515
Tsu03g00041 958 Gene3D - 688 958 IPR036397 GO:0003676
Tsu03g00041 958 CDD PAZ_argonaute_like 331 445 - -
Tsu03g00041 958 Pfam N-terminal domain of argonaute 119 269 IPR032474 -
Tsu03g00041 958 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 100 957 - -
Tsu03g00041 958 Gene3D paz domain 325 450 - -
Tsu03g00041 958 SUPERFAMILY F-box domain 32 90 IPR036047 GO:0005515
Tsu03g00041 958 Pfam Argonaute linker 1 domain 281 327 IPR014811 -
Tsu03g00041 958 SMART fbox_2 38 78 IPR001810 GO:0005515
Tsu03g00041 958 Pfam Mid domain of argonaute 526 568 IPR032473 -
Tsu03g00041 958 CDD Piwi_ago-like 496 917 IPR045246 -
Tsu03g00041 958 Pfam F-box domain 38 76 IPR001810 GO:0005515
Tsu03g00041 958 ProSiteProfiles Piwi domain profile. 620 923 IPR003165 GO:0003676
Tsu03g00041 958 SMART DUF1785_2 279 331 IPR014811 -
Tsu03g00041 958 Pfam Piwi domain 621 923 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00041 Tsu-Chr3 355956 364543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00041 102 958 Eukaryotic Initiation Factors Gene Family AT5G43810 34.773 3.07e-158 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00041 K11593 - pvy:116126885 1093.95