Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00028 ATGTGTAGGACGGAAGGTGGGATTCCACCATTAGTTCATTTGCTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCATTACGGACCCTGGCTtttaaaaatgatgaaaataagaaTCAGATTGTTGAATGCAATGCTCTTCCAACTCTGATTTTAATGCTCCGGTCAGAAGATGCTGCTATTCATTATGAAGCGgTTGGTGTGATCGGAAATCTGGTCCACTCCTCCCCCAATATAAAGAAAGAAGTTATTCTTGCTGGAGCCTTGCAACCGGTTATTGGATTACTTAGCTCTTGTTGCTCAGAAAGTCAGAGGGAGGCAGCATTGTTACTTGGACAGTTTGCAGCGACCGATTCAGATTGCAAGGTTCACATTGTACAAAGAGGTGCTGTACGGCCTTTGATAGATATGCTTCAGTCTCCCGATGTTCAGCTCAAAGAAATGTCTGCATTTGCATTGGGAAGATTGGCACAGGACACACATAACCAAGCTGGTATTGCACACACTGGCGGCTTAATGCCATTGCTGAAGCTTCTCGACTCAAAAAACGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGCCCGACTTTATTAGAGTAGGTGGAATTAAGAGACTCCAGGATGGAGAGTTTATTATTCAAGCAACTAAGGATTGTATTGCTAAGACATTGAAGAGACTAGAAGAGAAGATTCATGGTCGTGTGTTGAACCATTTGTTATATCTTATGCGAGTTTCAGAAAAGGCATTCCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGCAGATGACcagagaaaaatatttattgatcaCAATGGGCTGGAGTTGCTTATTGGACTTCTTGGTTCATCCTGTCCTAAGCAGCAACTTGACGGTGCCGTGGCGTTATGCAAGTTGGCTAACAAAGCTATGGCTCTGTCTCCTGTAGATGCTGCTCCTCCATCCCCAACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACCTTGTCTGACGTTACATTTTTGGTTGAAGGTAAACGGTTTTATGCTCACAGAATCTGTTTACTTGCATCTTCCGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATTGAGATTCCAAATATTAGATGGGAGGTCTTTGAGCTGATGATGAGATTTATATATACTGGATCAGTTGATGTCTCTCTTGAAATTGCTCAAGATCTCCTCCGAGCAGCTGATCAATATCTCTTAGAAGGGCTTAAGAGACTATGTGAATACACAATTGCACAGGATGTATCACTGGAGAGTGTGTCAAGTATGTATGAACTTTCGGAAGCCTTTAATGCTATATCATTGAGACACACATGCATACTTTTTATCTTGGAGCACTTCGATAAATTAAGTGCAATGCCAGGACACTCTCATTTGATTCAGTGTACAATACCTGAGATCCGCAATTACTTTGTTAAAACTCTTACAAAGGGGAACTCCAACATCCAGGCGTAG 1548 0.4173 MCRTEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVILAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIDMLQSPDVQLKEMSAFALGRLAQDTHNQAGIAHTGGLMPLLKLLDSKNGSLQHNAAFALYGLAENEDNVPDFIRVGGIKRLQDGEFIIQATKDCIAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCSADDQRKIFIDHNGLELLIGLLGSSCPKQQLDGAVALCKLANKAMALSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVSLEIAQDLLRAADQYLLEGLKRLCEYTIAQDVSLESVSSMYELSEAFNAISLRHTCILFILEHFDKLSAMPGHSHLIQCTIPEIRNYFVKTLTKGNSNIQA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00028 515 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 6 41 IPR000225 GO:0005515
Tsu03g00028 515 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 510 IPR044282 -
Tsu03g00028 515 Gene3D - 1 104 IPR011989 -
Tsu03g00028 515 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2-LIKE 3 510 - -
Tsu03g00028 515 SUPERFAMILY POZ domain 341 443 IPR011333 -
Tsu03g00028 515 Pfam BTB/POZ domain 342 444 IPR000210 GO:0005515
Tsu03g00028 515 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 132 174 IPR000225 GO:0005515
Tsu03g00028 515 ProSiteProfiles BTB domain profile. 349 416 IPR000210 GO:0005515
Tsu03g00028 515 SMART BTB_4 349 446 IPR000210 GO:0005515
Tsu03g00028 515 Gene3D Potassium Channel Kv1.1; Chain A 330 478 IPR011333 -
Tsu03g00028 515 Gene3D - 105 327 IPR011989 -
Tsu03g00028 515 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 173 215 IPR000225 GO:0005515
Tsu03g00028 515 SMART arm_5 1 35 IPR000225 GO:0005515
Tsu03g00028 515 SMART arm_5 121 161 IPR000225 GO:0005515
Tsu03g00028 515 SMART arm_5 37 77 IPR000225 GO:0005515
Tsu03g00028 515 SMART arm_5 277 317 IPR000225 GO:0005515
Tsu03g00028 515 SMART arm_5 79 119 IPR000225 GO:0005515
Tsu03g00028 515 SMART arm_5 162 202 IPR000225 GO:0005515
Tsu03g00028 515 CDD BTB_POZ_ARIA_plant 336 451 - -
Tsu03g00028 515 Pfam Armadillo/beta-catenin-like repeat 5 34 IPR000225 GO:0005515
Tsu03g00028 515 Pfam Armadillo/beta-catenin-like repeat 121 160 IPR000225 GO:0005515
Tsu03g00028 515 Pfam Armadillo/beta-catenin-like repeat 37 76 IPR000225 GO:0005515
Tsu03g00028 515 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 48 90 IPR000225 GO:0005515
Tsu03g00028 515 SUPERFAMILY ARM repeat 7 316 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00028 Tsu-Chr3 265075 273149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00028 99 319 U-box Gene Family AT2G23140 26.087 6.51e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu03g00028 BTB 2.7e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00028 - - gmx:100812456 934.095