Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00020 ATGGAACAAGCACTTCTCGGTGCACTCAATCTTGTATCTCGAAATCTTCCTCTTCCTCCAGAACTCTTCAACACTGTTTCTTCTATCTGTTACGGATCTGAACCCAAACCACTCCCTCTCAACTCCGATGTTGATGCGAGCAATTCTACACAAGATGATGATTTATTGACAGAGCTTCAAGATGCTTTGTCTAAACAACGACCTAATTGTTCTTCAAGTTCTAAATTAAATAAAGCAATGCAAATTCGTACTCAATCTCGGATTCAGAATCGCTTAACTCAGCTTGAAGGGTTGCCTTCGAATTGGGGAGACAACCTGCAGACAAAATGCTTGCTTGAGCTTTATGGACTAAAGCTAGTGGAGTTGCAAGGGAAGGTTCGAACGGAAGTGAATTCTGAATATTGGCTTAATGTTAAATGTGCATATCCTGACAAGCAATTGTTTGACTGGGGCATGATGCGGTTGCGGCGTCCTCCTTATGGTGTCGGAGATCCATTTGCCATGGATGCTGATGATCGAATAAGGAAGAAACGGGATGCTGAGAGACTatctagattagaagagcaagcAAAAAGTGACATAGAGACCAGAACAAGAAGATTTTTTGCAGAAATACTGAATGCTGTCCGCGAGTTCCAGTTACAAATCCAAGGTTCATTGAAGAGGAGAAAACAGAGGAATGATGCTGTTCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACTCGGGCTGAGAAATTGAGATTCCAAGCTTTAAAGGCTGATGATCAGGAAGCTTACATGAGAATGgtaaaagaaagtaaaaatgaAAGACTAACTTTGCTTCTTgaagaaacaaataaattgCTTGTAAATTTGGGAGCAGCGGTTCAACGTCAAAGAGACTCCAAACAATCAAATGGTATTGAACCCTTGGAAGATTCAGAAGCTGCGTTACCACAGTCAGATGCTTTGAAGAATGAAATTTCTAAGGAATCACCTCTTGAGGATGATGAGGATTTGATGGATTCTGATCATAATGATGATAGTAGTGATTTACTTGAAGGTCAACGACAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCATCTATCCTTCAAGGTGGAGAATTAAGACCCTACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTCAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGAAAGACAATACAAACCATTTCATTGATAGCATATCTTTTGGAATACAAGGGTGTGACTGGCCCTTTTTTGATTGTAGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAATGAGTTCTCAACCTGGGCTCCTAGCATTACAGCTGTTCTATACGACGGACGAATGGAAGAGAGGAAAGCAATAAAGGAAGAACTGTCAGGGGAGGGGAAATTCAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTGAAGAAAATCTATTGGAAATACTTGATTGTGGATGAAGGGCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTAGCTATCGCATTGAACGAAGACTTCTGTTGACCGGTACCCCAATTCAGAACAGCCTGCAGGAATTGTGGTCCCTGCTCAATTTTCTTCTCCCAAACATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGATCGAGTTGATGTGTCCTTAACAGATGAAGAACAATTATTGATTATTCGCCGTTTGCATCAGGTAATAAGGCCCTTCATACTAAGAAGGAAAAAGGCTGAGGTAGAGAAGTTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTGACTGACGTGGGCAGAGTTGGGTTAGACAATGGTTCTGGAAAATCAAAAAGTCTTCAGAACTTGACAATGCAACTCAGGAAGTGTTGTAACCATCCATACCTCTTTGTGGGAAACTATGATATATATAATCGTAAGGAGGAGATTTTCAGAGCATCGGGGAAATTTGAACTTCTTGACCGCTTGCTTCCTAAACTTCGTAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAAATGACCCGTCTCATGGATATTCTTGAAATTTATCTTCAACTTCATGATTATAAATTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTTCTAAAGAAATTCAATGCTCCTGACTCTCCGTACTTTATGTTTCTTTTGAGCACTCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTCGACAGTGATTGGAATCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGACAAAAGAAAGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAACGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATCCAGGCAGGCCTTTTCAACACAACATCAACAGCCCAGGACAGGAGAGAAATGTTAGAGGAGATCATGCGTAGAGGTAGTAGCTCACTTGGAACAGATGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCCGATGAGGAATTTTGGCTGTTCGAGAGAATGGACGAAGATAGAAGGCAAAAGGAGAACTACAGATCTCGTCTCATGACAGAGCATGAACTGCCAGATTGGGTGTACTCTGAACTAAATAAGGATGATAAGGCTAAAGCTTTTGACAGCAGTGGTATTACTGGaaagaggaaaagaaaagaagtggTATATGCAGATACATTAAGCGATCTACAATGGATGAAGGCTGTGGAAAGTGGACAGGATGTATCTAATCTTTCAGccaaaggaaaaagaagagttcGCTTACCTATTGACAGCCATGCACAAACGAGTGATGACACCGGGGAAGAAGAAAGGTTATTACAGTTGAGCAACATGGCTAATGAGAGATCAAATGAAGATACTTTCAATGCGACCCCTGCCTCTAAGAGACTCAAGCATGAAGAAATAAGTTCCCGTAAACATGGAATTGAAGATGTTGGAGGAAGTGGTTTGAACGAGCATGTACTTTCCTGGAATACTCACAGAAAGAAGAGATCAAGCTATCTTAGTCAGGGTTCATTATCTGATACCAGAGGGCAGAATGCAAATGGAAGAACAAGCTAA 3228 0.4009 MEQALLGALNLVSRNLPLPPELFNTVSSICYGSEPKPLPLNSDVDASNSTQDDDLLTELQDALSKQRPNCSSSSKLNKAMQIRTQSRIQNRLTQLEGLPSNWGDNLQTKCLLELYGLKLVELQGKVRTEVNSEYWLNVKCAYPDKQLFDWGMMRLRRPPYGVGDPFAMDADDRIRKKRDAERLSRLEEQAKSDIETRTRRFFAEILNAVREFQLQIQGSLKRRKQRNDAVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSKQSNGIEPLEDSEAALPQSDALKNEISKESPLEDDEDLMDSDHNDDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLLEYKGVTGPFLIVAPKAVLPNWVNEFSTWAPSITAVLYDGRMEERKAIKEELSGEGKFNVLITHYDLIMRDKAFLKKIYWKYLIVDEGHRLKNHECALARTLDSSYRIERRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGNYDIYNRKEEIFRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLQLHDYKFLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFERMDEDRRQKENYRSRLMTEHELPDWVYSELNKDDKAKAFDSSGITGKRKRKEVVYADTLSDLQWMKAVESGQDVSNLSAKGKRRVRLPIDSHAQTSDDTGEEERLLQLSNMANERSNEDTFNATPASKRLKHEEISSRKHGIEDVGGSGLNEHVLSWNTHRKKRSSYLSQGSLSDTRGQNANGRTS 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00020 1075 PANTHER ATP-DEPENDENT HELICASE BRM 50 1026 - -
Tsu03g00020 1075 CDD SF2_C_SNF 685 811 - -
Tsu03g00020 1075 Pfam Snf2-ATP coupling, chromatin remodelling complex 889 954 IPR029295 GO:0042393
Tsu03g00020 1075 SMART ultradead3 372 565 IPR014001 -
Tsu03g00020 1075 MobiDBLite consensus disorder prediction 293 346 - -
Tsu03g00020 1075 Pfam SNF2-related domain 379 667 IPR000330 GO:0005524|GO:0140658
Tsu03g00020 1075 MobiDBLite consensus disorder prediction 1014 1030 - -
Tsu03g00020 1075 SMART helicmild6 716 800 IPR001650 -
Tsu03g00020 1075 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 857 IPR001650 -
Tsu03g00020 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 855 IPR027417 -
Tsu03g00020 1075 MobiDBLite consensus disorder prediction 1001 1075 - -
Tsu03g00020 1075 MobiDBLite consensus disorder prediction 1050 1075 - -
Tsu03g00020 1075 Gene3D - 344 600 IPR038718 -
Tsu03g00020 1075 SMART SnAC_2 893 954 IPR029295 GO:0042393
Tsu03g00020 1075 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 388 554 IPR014001 -
Tsu03g00020 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 601 IPR027417 -
Tsu03g00020 1075 Gene3D - 607 906 IPR027417 -
Tsu03g00020 1075 PANTHER SNF2/RAD54 HELICASE FAMILY 50 1026 - -
Tsu03g00020 1075 Pfam Helicase conserved C-terminal domain 687 800 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00020 Tsu-Chr3 207536 214628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00020 358 827 RAD5 or RAD16-like Gene Family AT1G02670 27.629 1.04e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu03g00020 SNF2_N 5.8e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00020 - - gmx:100775993 1773.83