Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00015 atgtttggttcttcttcttcttcttcaagaaGCAATCACATTATGAATGATATGTTTGAGGATGAGTTGCCAAGAGCAAGAGAAGAAAGTTTCCAAATGGAATTTGGAGGTCCATCAAGACCAAGtgatgaacaacaacaacaacaacccaaCCAATGTCCCAAAAAAAGGAGCTATCGCCGCCACACACAAGAACAAATAGACGAACTGGATGCTTTCTTCAAGCAGAATGCTCACCCAGATGAGAGGGAAAGAAAAGAGTTGGGTCGTCGGCTTGGGTTAGATCCTTCACAAATCAAGTTTTGGTTTCAAAACAGGCGCACTGGTTTAAAGgTCCGAAGTGAAAGAGAAGAGAATGAAGTATTGAAGGCTGAAATTGAAAAGCTTCGAGCTGAGATGAATAGGTATAAAAACACCCCAACTACATGCAATGTGTGTGGAATCTCAGCTACCCTTGTGATGTCCAATGAGCAGCAACAATTGAAGTTGGAAAATGCTCTATTAAAAAAAGAGcttgAGAGATTTGGAGCTCAGAAACCGACAAATTTTGGTGATTCTCATAACAACATATCTTCATCGGTATTGAATAGCAATCAAGGACATGTTGATGTTGGATTCGTTGGTAGCTACAATGGAACAATGAATGGTATTGTTAGTGGTAGTGAACTTGTTAGATACTCTGTTCCGACTCAAGGTTTTGATGATAGCAAGATTGTTGAGTTAGCTGTTGTTGGAATGGATGAACTAATAAGATTGGATCAGGCTAGTGGGCCCCCTTTGTGGATCCCCACCACTTATCTTACTGAGATTCTAAATGGAGAAGAATATATGTTGCAATTTTCTAGAACCATTTGTCCCAACCCAATGGAGTTAAGACATGATGGTTCTAAAGATTCTGTTGTGGTCTTCATGAATCCTATTAGTTTGGTTGACATCTTTATGGATGTGAGTCAATGGTCAAATATGTTCTGTGGAATTGTTTCAAGAGCTGCAACACTCAATATCCTTTCAACCGGAGTGGCAGGAAATTATGATGGAGCCTTGCAAGTGATGTCGGCTGAATTTCAGGTTGCTTCACCATCTATTCCTACTCTTGAAAACTATTTCGTGAGATATTGTAAACTGCTTCCAAATCGTATATGGGTAGTGACTGATGTTCCCTTAGataatttttctccttcaccTAATAGTTCTATCTCAAAAACCAAAAGAAGAGTCTCTGGTTGTTTGATTCAAGAACTACCACATGGTTACTCTAAAGTTACATGGATTGAACATTTAGAAGTTGACAATAATGAGGTACAAACTATATATACACCTCTAATTAATTCTGGACTTGTATTTGGAGCTAAACGGTGGATAGCCATATTACAAAGACAATGTGAACGTCTTGTTTGTTCAATGTCCCGCAACATACCTATTGCAGGAAACATTGGTGTGACGATGACTAATGCGGGAAAGGAAAGTATGTTGAGGTTAGCAGGAAGAATGGTAACCAGCTTTTGTACTAGTATTGGTGCTTCTACAGCACATGCTTGGACAAATCTACCATCAAACGGGTCTGAGGAAATAAAGGTTATGACTAGAAAATATATGGACGAATCAGGCAGCGATAGACCCTCTGATGTAGTGCTAAGTACTGCTACTTCTTTCTGGCTTCCCATTCCTCCAAAAAGAGTTTTTGAGTTTCTTCGTAATGAAAGCTCAAGAAGTCAGTGGGATATTCTCTCGACTGGATGTACGGTTCAAGATGTGGCTCACATTACCAATGGTTGTGATCCTGGCAATTGTGTTTCTTTACTTCGTGTCAGTaGTGGAAATACAAGTCAAAGTAATAGGGTGGTACTACAAGAGAGTTGCACTGATATAACTGGCTCATATGTAGTATATGCGCCAGTGGATGTGATTGCAATGAACTTAGTATTATGTGGCGGAGACTCAAATTGTGTTACTATGATTCCTTCCGGATTTGCTATTCTTCCAGATGGAGGACCAATTATGAATAATGAATCTGGAGGTTCACTAATCACAGTTGGATTTCAGATTTTAGTTGATTCTGTTCCACATACAAGGCTAGCTTTGGGTTCAGTCTCCACTGTTAACACTTTGCTTAAGGCCACTGTGGAAAGGATTAAAGTTGCATTGATGCCTAAATGA 2157 0.3811 MFGSSSSSSRSNHIMNDMFEDELPRAREESFQMEFGGPSRPSDEQQQQQPNQCPKKRSYRRHTQEQIDELDAFFKQNAHPDERERKELGRRLGLDPSQIKFWFQNRRTGLKVRSEREENEVLKAEIEKLRAEMNRYKNTPTTCNVCGISATLVMSNEQQQLKLENALLKKELERFGAQKPTNFGDSHNNISSSVLNSNQGHVDVGFVGSYNGTMNGIVSGSELVRYSVPTQGFDDSKIVELAVVGMDELIRLDQASGPPLWIPTTYLTEILNGEEYMLQFSRTICPNPMELRHDGSKDSVVVFMNPISLVDIFMDVSQWSNMFCGIVSRAATLNILSTGVAGNYDGALQVMSAEFQVASPSIPTLENYFVRYCKLLPNRIWVVTDVPLDNFSPSPNSSISKTKRRVSGCLIQELPHGYSKVTWIEHLEVDNNEVQTIYTPLINSGLVFGAKRWIAILQRQCERLVCSMSRNIPIAGNIGVTMTNAGKESMLRLAGRMVTSFCTSIGASTAHAWTNLPSNGSEEIKVMTRKYMDESGSDRPSDVVLSTATSFWLPIPPKRVFEFLRNESSRSQWDILSTGCTVQDVAHITNGCDPGNCVSLLRVSSGNTSQSNRVVLQESCTDITGSYVVYAPVDVIAMNLVLCGGDSNCVTMIPSGFAILPDGGPIMNNESGGSLITVGFQILVDSVPHTRLALGSVSTVNTLLKATVERIKVALMPK 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00015 718 ProSiteProfiles START domain profile. 231 466 IPR002913 GO:0008289
Tsu03g00015 718 SMART START_1 240 463 IPR002913 GO:0008289
Tsu03g00015 718 MobiDBLite consensus disorder prediction 1 62 - -
Tsu03g00015 718 SUPERFAMILY Bet v1-like 237 463 - -
Tsu03g00015 718 Coils Coil 158 178 - -
Tsu03g00015 718 CDD homeodomain 56 107 IPR001356 GO:0003677
Tsu03g00015 718 Pfam Homeodomain 56 108 IPR001356 GO:0003677
Tsu03g00015 718 SMART HOX_1 55 117 IPR001356 GO:0003677
Tsu03g00015 718 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Tsu03g00015 718 Gene3D - 40 128 - -
Tsu03g00015 718 MobiDBLite consensus disorder prediction 15 29 - -
Tsu03g00015 718 CDD START_ArGLABRA2_like 236 462 - -
Tsu03g00015 718 Pfam START domain 260 463 IPR002913 GO:0008289
Tsu03g00015 718 SUPERFAMILY Bet v1-like 485 711 - -
Tsu03g00015 718 SUPERFAMILY Homeodomain-like 41 111 IPR009057 -
Tsu03g00015 718 MobiDBLite consensus disorder prediction 39 54 - -
Tsu03g00015 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 716 IPR042160 -
Tsu03g00015 718 Coils Coil 112 139 - -
Tsu03g00015 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 21 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00015 Tsu-Chr3 134971 139784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00015 11 715 Homeobox Transcription Factor Family AT4G21750 53.633 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu03g00015 START 5.4e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00015 K09338 - gmx:100782240 783.097