LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g00014	ATGTCAAatgtatggatatgtgaattGTTAGCATTAGTAACATTGTTGGTTTCATATAATGTTTTTGTGTGTGAATGTCAAGATCCCGGTCCTCTGCCTAAAGAAGCCGAAGACTGCAACGGAGTTTTCATTTCTTATGATTTACTCGATCGGAGGAAAGGATTTCCTCGCGTAAAGAACGTGACAGCACAATCTTGGGCCTTTAATGCAACTGCAAAAGTTCTCAACACAGGTAAAGATGTTGTTAAATCATGGAAGTTGTTCATAGGATTTCAACATCATGAAATTCTTGTCTATGCTTCTGGTGGTATTCCATTCGAAACGGGTGACTTTCCGGCTTCTGTTGAAAATGGGACAACCTTAGTTGGAAGTTCTCTTCCTGATTTGGAAAGTTCCATTAACACAGCCAATGATTTGACCCAAATTCAAGCATTGATTCAAATTGCTGGCACTCAATTTGGTGTTAGGCCACCTGGAATTCCCATGCCTAAAAATATCAAGTTGGAAAATGATGGATATAAGTGCCCTCAACCAAGTGTTCGTAAAAGTTCCATGTTTGCATGTTGTAAAAGCGACCCAACATACAAGTCAAAACTTTTGAAGACAAAATACTTTCCACGTCAAAAAGGTGATCTAACCATAACCTATGATATTCTTCAAGCATATGACAACAACTATAATGTTGAAGTAACCATGGAAAATCTTAACCCTTTAGCAAGGTTAGATCATTGGAACTTAACATTTGAATGGACAAGAGGTGAATTCATATACTCAATGAAAGGTGCTTTCACACGTGAAATGGATTCTTCAAAATGTATCTATGGTATTGCTGGACAATATTACAAAGATATGGATTTCACTAAAGTAactaattgtcaaaaaaatcctATAATCAGTGATTTGCCTCCTGAAAAATATAATGATACTGATATTGGTAAAATACCATTTTGTTGTAGAAATGGTTCTCTTTATTCCATAATTATGGATCCATCACAATCCAAGTCTAAATTTCAAATGCAAGTGTTTAAATCTCCACCTGATTTggataaaaaatcacttttccCACCTGCAAGATGGAAAATTATGGGACTTCTTAACTCAGATTATACTTGTGGTCCACCTTTGAAAGTTGAACCGTCACAATTTCCAGAACCTAGAGGACTTGAAGCTACTGTTTTTGCTATTTCTACCTGGCAAATTGTTTGCAATATGTCCAAACCAAAATTGAGGAAAACTAGATGTTGTGTCACTTTTTCTGCTTACTATAATGATTCTGTTGTTCCTTGCAACACATGTGCTTGCGGTTGTGATAACGATGATGATAGACGTTGTAATCCGAACGCCAAAGCGATGCTACTTCCTTCGGAAGCTCTTCTTGTACCCTATGAGAATAGAACACTAAAAACAGTTGCTTGGGCTAAGTTAAAGCATTTAAGTGTGCCTAAAAAATTACCATGTGGAGATAACTGTGGAGTTAGCATAAATTGGCACATAATTTCGGATTATAAAGGTGGATGGAGTGCTAGAATCACTCTTTTCAATTGGAAATCTATTCAATTTAAGGATTGGTTCACTGCCTTGCAATTCAAGAAAGGTGCTTCTCGTGGTTTTGAGAAAGTGTATTCTTTTAATGGATCATTACTTTCAAAAATCAATAACACTATTTTTATGCAAGGAGTTTTGGGAACAAATTATTTGATAGGACAAGACAATGAAACCAATCCAAAGATTCCTGGAAAACAACAATCTGTTATTTCTTTTAGCAAAAAATTTACACCAATGATGCAAATAGCAAAAGGTGATGGGTTCCCTTCAAAGGTAATTTTCAATGGAGAGGAGTGTTCCATTCCTACTCAATTTCCAATGCAAAGTGGAAATCGACATAATGTATATTTAGTACAAGAAATCTTAGTCTTAGTTTTAGCTTTTACAATCAATCAAATATTGTTTTAG	1953	0.3461	MSNVWICELLALVTLLVSYNVFVCECQDPGPLPKEAEDCNGVFISYDLLDRRKGFPRVKNVTAQSWAFNATAKVLNTGKDVVKSWKLFIGFQHHEILVYASGGIPFETGDFPASVENGTTLVGSSLPDLESSINTANDLTQIQALIQIAGTQFGVRPPGIPMPKNIKLENDGYKCPQPSVRKSSMFACCKSDPTYKSKLLKTKYFPRQKGDLTITYDILQAYDNNYNVEVTMENLNPLARLDHWNLTFEWTRGEFIYSMKGAFTREMDSSKCIYGIAGQYYKDMDFTKVTNCQKNPIISDLPPEKYNDTDIGKIPFCCRNGSLYSIIMDPSQSKSKFQMQVFKSPPDLDKKSLFPPARWKIMGLLNSDYTCGPPLKVEPSQFPEPRGLEATVFAISTWQIVCNMSKPKLRKTRCCVTFSAYYNDSVVPCNTCACGCDNDDDRRCNPNAKAMLLPSEALLVPYENRTLKTVAWAKLKHLSVPKKLPCGDNCGVSINWHIISDYKGGWSARITLFNWKSIQFKDWFTALQFKKGASRGFEKVYSFNGSLLSKINNTIFMQGVLGTNYLIGQDNETNPKIPGKQQSVISFSKKFTPMMQIAKGDGFPSKVIFNGEECSIPTQFPMQSGNRHNVYLVQEILVLVLAFTINQILF	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g00014	650	Pfam	COBRA-like protein	226	405	IPR006918	GO:0010215\|GO:0031225
	Tsu03g00014	650	PANTHER	COBRA-LIKE PROTEIN 7	8	647	-	-
	Tsu03g00014	650	PANTHER	COBRA-LIKE PROTEIN 7	8	647	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g00014	Tsu-Chr3	128903	130940	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g00014	33	642	COBRA Gene Family	AT3G20580	56.006	0.0	731

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g00014	-		-	mtr:MTR_5g005590	1109.75