Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00011 ATGgagaaagatagaagaatttCTTCAGCTATGATCATTATGCTAATCATTTTAATGTTAAAATCTGTCAACTTTGTTTCTGGTATAGACAATCTTATAGATACATATTGTCCAGATAATTTTCCACTTTACAATTCCAACACTTCATTCCACAAGAATCTCAAGCTTCTCATGGAAACTCTATCCTCAAACATAGTTGCTTCAAACACAAGTTTCTTCAACAATACATCAACAGGAGAAGGACTAGATGAAGTGTATGGACAAGCACTATGCCGAGGTGACATAACAAACTCAACAGTTTGCAAAGAATGCATTGAGAAAGCAAGCAAAGATTTAATGAATAGGTGTAAGAGTGAAGATGCAATGATATGGTACGACCTTTGTCAAGTTCGGTACTCGTTTCAGATGTTTTTCTCAAACGCCGTTTATACTGGAAAATATCCAAAGCAGAATGATCTAGAGAAGCGTGTCTCGGATCCTACTAGTTTCCAACAAGTGTTGACTTATTTAATGAACAATATCTCAAATGAGGCTGCTTTCAATCCTGCTAAGAACATGTTTGCAACTGCGGACATAGAATTTTCTAAGAAGAAAAAGGCGAGAATATATGGACTTGTTGAATGTACGAAGGACATTTCTGATACGGACTGCAGGAGTTGTTTGAGTTCTGCAATCACAGAACTCAATGCATGCTGCTCATACAGGGAAGGAGGGATTATTGTTAGTCGAAATTGCAACGTTAGATTCGACTTGTCTGAGTTTTTTAATGCTTCTTCATCAGCAGCACCCCTTTTGATTTTCCCAACCTCCAGAGGAGGGAAATGGAAGCCTTGGATGTTTGTGTTGACTATATGTGGCTCAATTTTGATAATATCAGTTCTTATTGTGTTTTGCATCGCTTGCATCCGGAAGAAAAAGGACAGAGAGAGAGACCAAGAAAGAACCGAAAGGACACTATTACAAGAGTTGGCTAGCCCCAAGAATGTAGCAATCACACAAGAAGGTGAGTTGATTAGTTCTGATCAACTGTTCATGACTTTAGCAACCATTAAGGCGGCTACCGGAAACTTTTCTGATACAAATAAGCTGGGACAAGGAGGGTTTGGTACAGTCTACAAGGGTGTTCTACCAGATGGTAATGAAATAGCAGTTAAAAGATTGTCAAGAAAGTCTTGGCAGGGCTTAGAAGAATTCAAAAATGAGGTTATTCTAATAGCTAAACTTCAACACAAAAATTTGGTGAAGTTGTTGGGTTGTGTCTTAGAAGGAGAGGAAAAGATACTCATATATGAACTCATGTCAAACAGAAGCCTTGATAAGTTTATATTTGATCCATACAAACGTCCTAAACTTGATTGGAAGACATGTTATGGCATCATCGGCGGCTTAGCAAAAGGACTTCTTTATCTGCATGAGGAGTCTCGGCTTAAAATCATTCACCGAGACCTAAAGCCAAACAATGTGTTGTTAGACCATGAACTAGTAGCCAAAATATCAGATTTTGGTATGGCCAGGATGTTTTCTGAGAATCAGAATACAGCAAACACAAAAAGAGTTGTGGGAACACATGGATATATGGCTCCAGAATATGCAATGGAGGGACTATTCTCCGTGAAATCTGATGTCTTCAGCTTTGGCGTAATTATGCTTGAAATCATCAGTGGAAAAAGAAATAACGGCTTTTACACAACCAAACTTGCCCCGACTTTGCTGGCACATGCTTGGCGACTGTGGAACGAAGGAAACGGATTAGAAGTTGTGGATCCTATATTATTGGTATCGTGTCTTGATTCTGAATATGAAGTTCTTAGGTGCGTTCATATTGCGCTCTTGTGTGTGCAGGAAGATCCGCAACACAGGCCGACCATGTCAAATGTTGTAGTACTACTAGGAAGTGAATCCATGGCTCTTCCCCAACCAAGACAACCAGCATTTTCATCGGGTAAGGCGATTCACGTAGATCCTACTGGATCAATAAATCATTCAGTGAATGAGAGTCTATGGTCTAGTGTTACACCACGATGA 2025 0.3911 MEKDRRISSAMIIMLIILMLKSVNFVSGIDNLIDTYCPDNFPLYNSNTSFHKNLKLLMETLSSNIVASNTSFFNNTSTGEGLDEVYGQALCRGDITNSTVCKECIEKASKDLMNRCKSEDAMIWYDLCQVRYSFQMFFSNAVYTGKYPKQNDLEKRVSDPTSFQQVLTYLMNNISNEAAFNPAKNMFATADIEFSKKKKARIYGLVECTKDISDTDCRSCLSSAITELNACCSYREGGIIVSRNCNVRFDLSEFFNASSSAAPLLIFPTSRGGKWKPWMFVLTICGSILIISVLIVFCIACIRKKKDRERDQERTERTLLQELASPKNVAITQEGELISSDQLFMTLATIKAATGNFSDTNKLGQGGFGTVYKGVLPDGNEIAVKRLSRKSWQGLEEFKNEVILIAKLQHKNLVKLLGCVLEGEEKILIYELMSNRSLDKFIFDPYKRPKLDWKTCYGIIGGLAKGLLYLHEESRLKIIHRDLKPNNVLLDHELVAKISDFGMARMFSENQNTANTKRVVGTHGYMAPEYAMEGLFSVKSDVFSFGVIMLEIISGKRNNGFYTTKLAPTLLAHAWRLWNEGNGLEVVDPILLVSCLDSEYEVLRCVHIALLCVQEDPQHRPTMSNVVVLLGSESMALPQPRQPAFSSGKAIHVDPTGSINHSVNESLWSSVTPR 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00011 674 ProSiteProfiles Gnk2-homologous domain profile. 145 254 IPR002902 -
Tsu03g00011 674 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 672 - -
Tsu03g00011 674 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 672 - -
Tsu03g00011 674 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Tsu03g00011 674 ProSiteProfiles Gnk2-homologous domain profile. 32 137 IPR002902 -
Tsu03g00011 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Tsu03g00011 674 Gene3D Transferase(Phosphotransferase) domain 1 433 638 - -
Tsu03g00011 674 SUPERFAMILY Protein kinase-like (PK-like) 341 629 IPR011009 -
Tsu03g00011 674 SMART serkin_6 357 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00011 674 Pfam Salt stress response/antifungal 43 134 IPR002902 -
Tsu03g00011 674 Pfam Salt stress response/antifungal 158 250 IPR002902 -
Tsu03g00011 674 Pfam Protein tyrosine and serine/threonine kinase 360 628 IPR001245 GO:0004672|GO:0006468
Tsu03g00011 674 Gene3D - 148 254 IPR038408 -
Tsu03g00011 674 Gene3D - 31 137 IPR038408 -
Tsu03g00011 674 Gene3D Phosphorylase Kinase; domain 1 319 432 - -
Tsu03g00011 674 CDD STKc_IRAK 363 627 - -
Tsu03g00011 674 ProSiteProfiles Protein kinase domain profile. 357 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00011 Tsu-Chr3 109786 112472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00011 33 645 Receptor kinase-like Gene Family AT4G23230 42.289 8.18e-169 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g00011 PK_Tyr_Ser-Thr 7.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00011 - - gmx:102669229 924.85