Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00010 atgattcATCATTTTACAGTTTCCAAATCCATtaaattcttctttcttttttgtattcTTGAATTCCTTCCATATGTTACCTTTGCAGATCCTCCATATGAAGTTTGTTCCGCAAGAAACATCTCTGCAAATCAAAGTTCCTTTGAGAACAATCTAAGTAACCTCCTTCTCTCTTTACCTTCTAATGATTCAACTTCAATCTCCAAATTTGGCAATACTTCTTCAGGAATTGGCTTAGATAGAGTTTATGGACTCTACATGTGCCTCGACTTTGTTTCCAACAAAACTTGCCAAAATTGCGTAACAAACGCAATATCAGACATTGTAAAACTGTGTCCTCAATCAGAAGAAGCAATTGTATATGAAGAGTTCTGTCAATTAcgttattcaaataaaaatttcataggCACCTTGAATGTCACTGGGAACATTGGTGCAGATAATAGACAGAATATTTCGGAACCAGAGAAATATGAATCTGTTGTGAATAAGATATTGAATAATCTTACTGAGATAGCGTCTTTTAATGTTTCTTCGAATATGTATGCTACCGGAGAAGTAAACTTTGAAGATAAAACAATATACGCGTTAGTACAGTGCACTAGAGATTTATCGGACACTGATTGCAGTAGGTGTCTGCTAAGTGCTATGGGAGATATACCGGGTTGTTGCTATGCTTCCATTGGTGCAAGAGTTTGGAGTCGTAGTTGTTATTTGAGATATGAATTTTATCCCTTTTATCTTGGCGAAACCGATCAAAGAAGCTCTTCAACCAACCAAGGAAAGAAAAGTAAGAATTTCTCATGTAAATCAAGCAAAATCTGGATAATTACGTCCATTGCAGCTGGAGTAGGCTTGGTGATAATAATTTTCATTTGCTACTTGTGCTTTGTCAGGAACAAAAGGATTTGGCAAAGTAACAAAATATCTAAGGATTTCCCTTTTTTTGATCTTGGATCTCTTTGTATGGCTACCGGAAATTTCTCCGATTCAAATATGCTCGGGCAAGGTGGATTTGGACCTGTTTATAAGGGTATACTTAGTGATGGCATGGAAGTGGCAATCAAGAGGCTTTCAACTTGTTCTGAGCAGGGTTCGGAGGAATTCATTAACGAGGTTATGCTGATATTGAAACTTCAACACAAAAATCTTGTGAAGCTTTTAGGATTTTGTGTTGATGGAGAAGAGAAGCTTCTTGTTTATGAATATTTGCCTAATGGTGGCCTTGATGTCGTCCTTTTCGAGCAAGGTGCACAGCTCGATTGGATGAAACGGGTTGATATAATAAATGGAATAGCAAGGGGAATTCTTTATCTTCATGAAGATTCTCGACTTCAAATAATACATAGAGATCTAAAAGCAAGTAACGTGTTGTTGGACTATGACATGAATCCAAAGATTTCTGACTTTGGAATGGCAAGAATATTTGCAGGAAGTGAAGGTGAAGCTAACACTGCTACAATAGTTGGCACATTTGGATATATGGCTCCAGAGTATGCAATGGAGGGTATATATTCCATAAAATCCGATGTTTTCGGTTTTGGAGTACTATTACTCGAGATCATTACAGGGAAACGTAACACAGGTTTCTATTACTCCAAAAGCACTCCTAGCCTTCTAGCATACGCATGGCATCTATGGAATGATGGAAAAGGATTGGAGTTGAGGGATCCGTTGTTATTATGTCCGGGAGACCAGTTTTTACGATACATGAATATTGGACTACTATGTGTTCAAGCAGATGCATTTGATAGGCCAACCATGTCTTCTGTtgttttgatgttgatgaatgaATCTGTGACTCTCGGCCCGCCAGAAAAGCCTCCTTTCTCTGTAGGCAGACTTAATGATCCAAATTTGCTAGATTTGGAAGATTGCTCAGTCAATTATGATTTCTTAACTGTTTCTGATATCTTGCCCCTGCAATGTCAATGA 1935 0.3659 MIHHFTVSKSIKFFFLFCILEFLPYVTFADPPYEVCSARNISANQSSFENNLSNLLLSLPSNDSTSISKFGNTSSGIGLDRVYGLYMCLDFVSNKTCQNCVTNAISDIVKLCPQSEEAIVYEEFCQLRYSNKNFIGTLNVTGNIGADNRQNISEPEKYESVVNKILNNLTEIASFNVSSNMYATGEVNFEDKTIYALVQCTRDLSDTDCSRCLLSAMGDIPGCCYASIGARVWSRSCYLRYEFYPFYLGETDQRSSSTNQGKKSKNFSCKSSKIWIITSIAAGVGLVIIIFICYLCFVRNKRIWQSNKISKDFPFFDLGSLCMATGNFSDSNMLGQGGFGPVYKGILSDGMEVAIKRLSTCSEQGSEEFINEVMLILKLQHKNLVKLLGFCVDGEEKLLVYEYLPNGGLDVVLFEQGAQLDWMKRVDIINGIARGILYLHEDSRLQIIHRDLKASNVLLDYDMNPKISDFGMARIFAGSEGEANTATIVGTFGYMAPEYAMEGIYSIKSDVFGFGVLLLEIITGKRNTGFYYSKSTPSLLAYAWHLWNDGKGLELRDPLLLCPGDQFLRYMNIGLLCVQADAFDRPTMSSVVLMLMNESVTLGPPEKPPFSVGRLNDPNLLDLEDCSVNYDFLTVSDILPLQCQ 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00010 644 SMART serkin_6 328 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00010 644 Gene3D - 30 134 IPR038408 -
Tsu03g00010 644 Gene3D - 144 246 IPR038408 -
Tsu03g00010 644 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 78 637 - -
Tsu03g00010 644 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Tsu03g00010 644 Pfam Salt stress response/antifungal 150 243 IPR002902 -
Tsu03g00010 644 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 78 637 - -
Tsu03g00010 644 CDD STKc_IRAK 334 597 - -
Tsu03g00010 644 Pfam Protein tyrosine and serine/threonine kinase 332 592 IPR001245 GO:0004672|GO:0006468
Tsu03g00010 644 ProSiteProfiles Gnk2-homologous domain profile. 29 134 IPR002902 -
Tsu03g00010 644 ProSiteProfiles Protein kinase domain profile. 328 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00010 644 Gene3D Phosphorylase Kinase; domain 1 294 403 - -
Tsu03g00010 644 ProSiteProfiles Gnk2-homologous domain profile. 140 246 IPR002902 -
Tsu03g00010 644 SUPERFAMILY Protein kinase-like (PK-like) 305 595 IPR011009 -
Tsu03g00010 644 Gene3D Transferase(Phosphotransferase) domain 1 404 601 - -
Tsu03g00010 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00010 Tsu-Chr3 106058 108620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00010 5 641 Receptor kinase-like Gene Family AT4G05200 42.051 1.38e-163 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g00010 PK_Tyr_Ser-Thr 4.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00010 - - gmx:102669364 884.019