Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00009 ATGGCTTGGCCAAAACCAGTACtagtatttctttttatttccattattattattaatttcacaTATTTTGGTAACACTAAAGCAGAGGACACTCCTGTCCTTCTCCACAAAAATTGTTCAACCAACAGTACAACCACCGCCAACAGCCCCTTCCAACTCAATCTAAAGACTCTCCTTACTTCCCTCTCTTCTAACCCCACCGAATTCCACAACACCACCGTCACAGGAAATCCCCCCTCCAACACTGTCTACGGACTCTACATGTGCAGAGGTGACGTCTCACTCCCTCTCTGCCGACACTGCGTTCTAAACGCAACACAGACACTTTCCTCAGAATGTTCCCTTTCTAAACAGGCAGTTATATGGTACGACGAGTGCACCGTACGCTACTCAAATCGTTCTTTTTTCTCCACCTTTGATACTAGACCTCGCGTTGGTCTACTTAACACAGCAAACATAACCAACCAACAAAGCTTCATGCGTTTATTGTTTCGAACTATGAACAAAACTGCTGATGATGCTTCTAATCATCCTATTGGTTCTAAGAAATATGCAACCAATCAAGCTACTATATCTGGTTTTCAGAATTTGTATTGTTTGGCTCAGTGTACGCCTGATTTGTCTCCTCAAGATTGTAGAAGGTGTCTTGGTGCTGTTATTGGGGATCTTCCTTGGTGTTGTATGGGAAAACAAGGTGGAAGAGTTTTATATCCTAGCTGTAATGTTAGGTAtgaattgtaccctttttttcACATTAACAATGCTTCATCGCCGTCTCCTTCATCGTCAATTCTTCCTCCTGCAACTACTAATCCGGCTAATTCCCGAGGAGGAAGCAGTGGAATATCAGGTGGGACAATTGTTGCAATTGTAGTTCCAATCATAGTTGTTGCACTTCTGTTTATAGTGGCCATTTGTTTCTTGAGTAAAAGGGCAAGGAAGAAGCGTGATTCTCTACAAGATGGAAACACTGCAAATGATATCACCACTATGGAGTCCTTGCAATTTGATTTCGGCACAATTGAAGCAGCCACCAACAAATTCTCTGCAGATAATAAGTTGGGCGAAGGTGGATTTGGTGAAGTTTTTAAGGGCACTCTTCCAAGTGGACAAGAAATAGCTGTCAAGAGACTCTCCAAAAGTTCTGGACAAGGTGGAGCAGAATTTAAGAATGAAGTTGTTGTAGTTGCCAAGCTACAACACAGAAATTTGGCCAGGCTTCTTGGATTTTGCTTGCAGGGAGAGGAAAAGATACTTGTTTATGAATATGTAGCCAACAAAAGTTTGGACTATACTCTATTTGATCCCGAAAAGCAAGGGAAACTTGATTGGGCAAGGCGGTACAAGATTATTGAAGGGATTGCTCGAGGCATGCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACACCGTGATCTTAAAGCTAGCAACATATTGTTGGATGGAGATATGAATCCAAAAATCTCAGATTTTGGCATGGCAAGAATAGTTGGAGTTGATCAAACTCAAGGAAACACTAGCAGAATTGTAGGAACTTATGGTTACATGGCTCCAGAGTATGCAATGCATGGAGAATTCTCAGTAAAGTCTGATGTATACAGTTTTGGAGTTCTCATTATGGAGATTATAAGTGGCAAGAAAAATAGCTCTTTCTATGACACTGATGGTTCTGATGATCTAGTGAGCTATACATGGAAAGTTTGGAAAGAAGGAGCACCATTAGAACTAGTGGACCCTatattaagagaaaaaattacTCCAAATGAAGTTATCAGAAGCATTCATATTGGTTTGCTTTGTGTTCAAGAAGATCCAAGTGACAGGCCAACAATGGCATCAATAGTTCTTATGCTTGACAGTAACACAGTTACTCTTCCAGCTCCGAAGCAGCCAGCATTTTTCGTCAACAGTATTGCAACTGATCCAACCAGGCCGAAGGAGCTGCGATTTGACTCTTCTACAACTTCTGTGAATGAGATGTCAATCAGTGACATGGATCCGCGATAA 2010 0.402 MAWPKPVLVFLFISIIIINFTYFGNTKAEDTPVLLHKNCSTNSTTTANSPFQLNLKTLLTSLSSNPTEFHNTTVTGNPPSNTVYGLYMCRGDVSLPLCRHCVLNATQTLSSECSLSKQAVIWYDECTVRYSNRSFFSTFDTRPRVGLLNTANITNQQSFMRLLFRTMNKTADDASNHPIGSKKYATNQATISGFQNLYCLAQCTPDLSPQDCRRCLGAVIGDLPWCCMGKQGGRVLYPSCNVRYELYPFFHINNASSPSPSSSILPPATTNPANSRGGSSGISGGTIVAIVVPIIVVALLFIVAICFLSKRARKKRDSLQDGNTANDITTMESLQFDFGTIEAATNKFSADNKLGEGGFGEVFKGTLPSGQEIAVKRLSKSSGQGGAEFKNEVVVVAKLQHRNLARLLGFCLQGEEKILVYEYVANKSLDYTLFDPEKQGKLDWARRYKIIEGIARGMQYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGMARIVGVDQTQGNTSRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLIMEIISGKKNSSFYDTDGSDDLVSYTWKVWKEGAPLELVDPILREKITPNEVIRSIHIGLLCVQEDPSDRPTMASIVLMLDSNTVTLPAPKQPAFFVNSIATDPTRPKELRFDSSTTSVNEMSISDMDPR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00009 669 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 667 - -
Tsu03g00009 669 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 7 667 - -
Tsu03g00009 669 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Tsu03g00009 669 Pfam Domain of unknown function (DUF3403) 621 669 IPR021820 GO:0004674
Tsu03g00009 669 Gene3D Phosphorylase Kinase; domain 1 309 423 - -
Tsu03g00009 669 SMART serkin_6 348 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00009 669 MobiDBLite consensus disorder prediction 257 277 - -
Tsu03g00009 669 ProSiteProfiles Protein kinase domain profile. 348 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00009 669 Gene3D - 144 249 IPR038408 -
Tsu03g00009 669 Gene3D - 32 135 IPR038408 -
Tsu03g00009 669 Pfam Protein tyrosine and serine/threonine kinase 350 617 IPR001245 GO:0004672|GO:0006468
Tsu03g00009 669 MobiDBLite consensus disorder prediction 646 669 - -
Tsu03g00009 669 SUPERFAMILY Protein kinase-like (PK-like) 333 655 IPR011009 -
Tsu03g00009 669 ProSiteProfiles Gnk2-homologous domain profile. 141 249 IPR002902 -
Tsu03g00009 669 Pfam Salt stress response/antifungal 39 132 IPR002902 -
Tsu03g00009 669 Pfam Salt stress response/antifungal 152 247 IPR002902 -
Tsu03g00009 669 CDD STKc_IRAK 354 620 - -
Tsu03g00009 669 ProSiteProfiles Gnk2-homologous domain profile. 33 135 IPR002902 -
Tsu03g00009 669 Gene3D Transferase(Phosphotransferase) domain 1 424 628 - -
Tsu03g00009 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00009 Tsu-Chr3 98246 102062 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00009 32 669 Receptor kinase-like Gene Family AT4G05200 53.951 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g00009 PK_Tyr_Ser-Thr 6.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00009 - - gmx:100305391 951.044