LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g00007	ATGATTACAATCTTGTTTTCCTTGCTATATCTAACCTTAGCAATACAAGCATCTCCCACATACATCGGTTCTTACTGCAATGACAACACAACATACTTACCAAACACCACACTTGATACAAACATCAATGTTCTCCTTAATTCTCTTACCACAAACGCTTCCCAACAAGACAGTGGTTACTACATGACAATCATGGGTTTTGGAACAAATAGCGCCATTAACGGAGAATTTCTCTGTCGTGGTGACATCAACACAACAATTTGTCAAAACTGTGTTACTGACGCAGCTAAACAGATCAAACGCCGTTGTAACAACCAAACGGAAGCGGTTATTTGGTACGAAGAGTGTTTGATTCGTTACACAAacaagtattttaaattttacagCATAGAACCAAGATTGAATCCTAGAGATGGTAGAAATGTTTCAGGCGTTGACTTTGACCGGTTCAATAATTCGGTTATTGGGTTGTTGAATGGTTTGGCTGTTAAAGCGGCGAATTCAGAGACGGCGAAGAAATTTGCTACCGGAGAAGTGGAAATTACGAGAAGGGGCACGACGGTTTATGGGTCGGGGCAGTGTATGACGGATTTATCGAATGGTCAGTGTGAGACTTGTTTGAGAAATGCGATTGGAACTCTTCCACTGTGTTGTTTTGGTCAACAGGGTGCTGGTGCTATGCTTGCGTCTTGTATTGTTAGATatgaaatctatcctttttacACCATACCTTCTTcagGAAAAAATGGAATTGGAACAAAAGCAATTCTCATAATTGTTTTTCTAGCCTTTCTTCCAgtattacttttaattttaggtTGCTATTACAAACAGAGAAGATCAAGACTGAGACATCGTGCAATGTTAAGAGAAAATTTTGGAGATGAACTTCAAACACTAGAgtcattacaattcaaatttGCTACAATTGAAGCTGCCACAAACAAATTTTCACATGTCAATGAGATAGGCAAAGGAGGATTTGGTATTGTCTACAAGGGTGTTCTTTCTGATGGTCGACAAATAGCAGTAAAAAAACTCTCACTTGGTTCAGGACAAGGTTCAATagaatttcaaaatgaaattttactGATAGCCAAATTACAACATAGAAATTTGGTGACTTTATTAGGATTCTGCTTGGAAGAGCGAGAGAAAATGCTTATATACGAATATGTGCCTAATAAGAGTCTTGATTATTTTCTATTCCATCCTCAAAAGCACAGGGTGTTACACTGGTTTGAGCGTTATAAAATTATCGGAGGAATTGCACGAGGAATTCTTTATTTACATGAGTACTCAAGGCTTAAAGTCATACATCGAGATCTCAAACCTAGTAATGTATTGTTAGATGACAGTATGAATCCAAAAATATCAGATTTTGGTTTGGCAAGAATAGTTGCTATCGATCAAGAACAAGGAAGGACTAATAGAATTGTGGGAACATAtggTTATATGTCTCCAGAATATGCAATGCACGGACAATTTTCTGAGAAATCGGATGTGTTTAGTTTTGGAGTTATAGTTCTTGAGATAGTTAGTGGAAAGAGAAACAATCGTCCCATTGAATCACACGATTTTGATGACCTCATAAGAATTGCTTGGAGACTATGGAAGAATCAAACACCATTAGAAATGTTGGACCCCATTCTAAATGACTCGTTTTCTCATAGTGAAGTTATCAAGTGCATTCAACTTGGTTTATTATGTATTCAAGAAAATCCAGATGATAGACCTACAATGGCACAAGTTGTTTCATATCTCAGTAGTCTTTTAGTTGAATTGCCATTTCCTCAAGAGCCAGCATCTTCCATGGATAGAGAAATGAAGTTAAACATTACAACAACAGAGTCTAGTTCTGGTCAATTTATTAGTCACTCTAATTCTACGTCATCCTCAATCAATGACATCACTAAGAGTCAATTTTTCCCTCGATAA	1938	0.3566	MITILFSLLYLTLAIQASPTYIGSYCNDNTTYLPNTTLDTNINVLLNSLTTNASQQDSGYYMTIMGFGTNSAINGEFLCRGDINTTICQNCVTDAAKQIKRRCNNQTEAVIWYEECLIRYTNKYFKFYSIEPRLNPRDGRNVSGVDFDRFNNSVIGLLNGLAVKAANSETAKKFATGEVEITRRGTTVYGSGQCMTDLSNGQCETCLRNAIGTLPLCCFGQQGAGAMLASCIVRYEIYPFYTIPSSGKNGIGTKAILIIVFLAFLPVLLLILGCYYKQRRSRLRHRAMLRENFGDELQTLESLQFKFATIEAATNKFSHVNEIGKGGFGIVYKGVLSDGRQIAVKKLSLGSGQGSIEFQNEILLIAKLQHRNLVTLLGFCLEEREKMLIYEYVPNKSLDYFLFHPQKHRVLHWFERYKIIGGIARGILYLHEYSRLKVIHRDLKPSNVLLDDSMNPKISDFGLARIVAIDQEQGRTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIVLEIVSGKRNNRPIESHDFDDLIRIAWRLWKNQTPLEMLDPILNDSFSHSEVIKCIQLGLLCIQENPDDRPTMAQVVSYLSSLLVELPFPQEPASSMDREMKLNITTTESSSGQFISHSNSTSSSINDITKSQFFPR	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g00007	645	ProSiteProfiles	Gnk2-homologous domain profile.	130	240	IPR002902	-
	Tsu03g00007	645	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	5	626	-	-
	Tsu03g00007	645	Pfam	Salt stress response/antifungal	148	237	IPR002902	-
	Tsu03g00007	645	Pfam	Salt stress response/antifungal	26	122	IPR002902	-
	Tsu03g00007	645	ProSiteProfiles	Protein kinase domain profile.	317	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00007	645	ProSiteProfiles	Gnk2-homologous domain profile.	20	125	IPR002902	-
	Tsu03g00007	645	Pfam	Protein kinase domain	318	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00007	645	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	438	450	IPR008271	GO:0004672\|GO:0006468
	Tsu03g00007	645	SUPERFAMILY	Protein kinase-like (PK-like)	302	615	IPR011009	-
	Tsu03g00007	645	Gene3D	-	18	125	IPR038408	-
	Tsu03g00007	645	Gene3D	-	139	240	IPR038408	-
	Tsu03g00007	645	ProSitePatterns	Protein kinases ATP-binding region signature.	323	346	IPR017441	GO:0005524
	Tsu03g00007	645	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	5	626	-	-
	Tsu03g00007	645	MobiDBLite	consensus disorder prediction	616	645	-	-
	Tsu03g00007	645	SMART	serkin_6	317	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu03g00007	645	Gene3D	Phosphorylase Kinase; domain 1	278	392	-	-
	Tsu03g00007	645	Gene3D	Transferase(Phosphotransferase) domain 1	393	600	-	-
	Tsu03g00007	645	CDD	STKc_IRAK	323	591	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g00007	Tsu-Chr3	75390	79175	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g00007	5	645	Receptor kinase-like Gene Family	AT4G05200	44.131	0.0	544

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Tsu03g00007		Pkinase	2.4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g00007	-		-	cam:101500396	1019.61