Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00005 ATGGCTGATCCAAAACACAAACTCCTTTTCATATTTCTGTGTGCGATGCTAAACTtgttaacaacaacaaaagcaacACCAACTTACACAACAACTCATTGCACAAACACAACCACTTATGCACCCAACACCACTTTCCAAACCAATCTCAACATCCTCTTCTATTATTTTTCCAACAATATCTCCCAATCCAACGGTTACTTTTTCTCCATCACCGGTTTCAACACCGACGATGCCGTTGGCGGACTTTACATCTGCCGCGGCGACATCACCACCACAGTCTGCGATCAGTGTCTCACCGCAGCAGTCAAAGAGATAAGAATTCGATGTCCGAATCAAACAGAGGCTCTGATTTGGTACGATGAATGCTTCCTACGTTTCACAAACAGATATTTCGCCATCGATAAGATCGTTCCTAGAGCCAACTTTGATGACGGGAATATTTCCTCCGGCGTTGACTTGGAAAGATTCAACCAATCGTTGCATGGATTGCTGAATGATTTGGCAACAGAAGCTGCGGCAAGTTTACAGTCGAAGAAGTTCGCCGCCGGTGACACTCCGGTGATGGAGTCGATGAAGGTTTATGGATTGGTGCAGTGCACGAATGACTTAACGAAAAGTCAGTGCGAGACTTGTTTGAGAAATGCAATTGGAACTCTTCCTAATGGAAAACAGGGTGCAAGAGCTTTGCTTCCGTCTTGTAATGTTAGATACCAACTTTACCCTTTTTTCACtttatcttcatcatcatcttcagGGGACAGCAAACTTGGACCTGGTACGATTGCGGTCGTGATTGTTGTACCCGTTGTTTTCCTAATTATCTTATTCTTAGGTTGTTACTATTTCAAGAAAAGGTCCAAGATAAAGAAGAGACTAATGCATAGTTTGATGGAAAATTTTGGGGATGAAATTCCAAGTTTGGAGTCATTGCAGTTCAATTTGGCCACTCTAGAAACAGCCACTAACCAATTCTCATTGCAAAATAAGATTGGAAGCGGAGGATTTGGACAAGTTTACAAGGGGGTTTTGCTAGATGGGAGACAAATAGctgtaaaaaaactttcaaaaagcTCAGGACAAGGAACAATAGAATTTAAAAATGAGATTGTGTTAATAGCCAAACTCCAACATAGAAATTTAGTAACCTTGTATGGATTTTGCTCCgaagaacaagaaaaaatgCTTGTTTATGAATATGTGCCCAATAAAAGTCTTGATTACTTCTTATTCGATCCTAATAAAGGAAGAGTTTTGAGTTGGGATGAAAGATATAAAATCATAGGAGGAATTGCACGAGGAATTCATTACTTACATGATCAATCAAGGCTAAAAGTTATACACCGTGATCTCAAACCTAGCAATATATTGTTAGATGAGATGATGAATCCAAAAATATCTGACTTTGGTATGGCAAAAATTATTGATATAGATCAACATCAAGGAAATACTAAGAGGATTGCCGGAACTTAtggTTATATGTCTTCCGAATATGCAATGCATGGACATTATTCAGAAAAATCAGATGTGTTTAGCTTTGGAGTCATACTTATAGAGATAATTAGTGCAAAGCGGAATGCACTTAGTATTGGTTCACCAGTTTTTGACGACCTCTTGAGTTATGCTTGGAAAACTTGGAAGGATGAAAAACCTCTAGAAGTATTGGACTCTGATatagaaaaatcattttcttacGGTGAAGTCATTAAATGCATTCAAATTGGTTTATTATGTGTGCAACAAAATCCAGATGATAGACCAACAATGGAAAGAGTTGTTTCATATCTGAGTAGTGTTTTAGTGGAGTTACCATTGCCTCAAGAGCCTGCAGGTTTCATGGGTAATGGAACGAATCCAAGGGATAATTCAGATCAACATAACAATAGTAATACTACGGGATCCTCAATTAATGATATGACCATGAGTCATTATTTTTCTCGATAG 1944 0.3693 MADPKHKLLFIFLCAMLNLLTTTKATPTYTTTHCTNTTTYAPNTTFQTNLNILFYYFSNNISQSNGYFFSITGFNTDDAVGGLYICRGDITTTVCDQCLTAAVKEIRIRCPNQTEALIWYDECFLRFTNRYFAIDKIVPRANFDDGNISSGVDLERFNQSLHGLLNDLATEAAASLQSKKFAAGDTPVMESMKVYGLVQCTNDLTKSQCETCLRNAIGTLPNGKQGARALLPSCNVRYQLYPFFTLSSSSSSGDSKLGPGTIAVVIVVPVVFLIILFLGCYYFKKRSKIKKRLMHSLMENFGDEIPSLESLQFNLATLETATNQFSLQNKIGSGGFGQVYKGVLLDGRQIAVKKLSKSSGQGTIEFKNEIVLIAKLQHRNLVTLYGFCSEEQEKMLVYEYVPNKSLDYFLFDPNKGRVLSWDERYKIIGGIARGIHYLHDQSRLKVIHRDLKPSNILLDEMMNPKISDFGMAKIIDIDQHQGNTKRIAGTYGYMSSEYAMHGHYSEKSDVFSFGVILIEIISAKRNALSIGSPVFDDLLSYAWKTWKDEKPLEVLDSDIEKSFSYGEVIKCIQIGLLCVQQNPDDRPTMERVVSYLSSVLVELPLPQEPAGFMGNGTNPRDNSDQHNNSNTTGSSINDMTMSHYFSR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00005 647 MobiDBLite consensus disorder prediction 616 647 - -
Tsu03g00005 647 CDD STKc_IRAK 331 596 - -
Tsu03g00005 647 ProSiteProfiles Gnk2-homologous domain profile. 28 132 IPR002902 -
Tsu03g00005 647 Gene3D - 27 132 IPR038408 -
Tsu03g00005 647 Gene3D - 140 243 IPR038408 -
Tsu03g00005 647 Pfam Protein kinase domain 326 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00005 647 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
Tsu03g00005 647 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 624 - -
Tsu03g00005 647 Gene3D Transferase(Phosphotransferase) domain 1 401 603 - -
Tsu03g00005 647 SMART serkin_6 325 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00005 647 ProSiteProfiles Gnk2-homologous domain profile. 139 243 IPR002902 -
Tsu03g00005 647 MobiDBLite consensus disorder prediction 610 647 - -
Tsu03g00005 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Tsu03g00005 647 Pfam Salt stress response/antifungal 155 240 IPR002902 -
Tsu03g00005 647 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Tsu03g00005 647 SUPERFAMILY Protein kinase-like (PK-like) 311 610 IPR011009 -
Tsu03g00005 647 Gene3D Phosphorylase Kinase; domain 1 284 400 - -
Tsu03g00005 647 ProSiteProfiles Protein kinase domain profile. 325 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00005 647 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 14 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00005 Tsu-Chr3 60670 69479 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00005 11 647 Receptor kinase-like Gene Family AT4G05200 43.070 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g00005 Pkinase 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00005 - - cam:101500396 954.896