Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00004 ATGACTGCTCCAAAATACTTACTGCACAAACTTACACAACTACTTTCCATATGTCTGtgtgtgatgatgatgaacttgttgacaacaacaacaacaacaaaagcaacACCAACTTACACAACTACTTACTGCACAAACACAAACACTTATGCATCCAACGCCATTCTCGTTCACTTCTTGTCACGTTTCTCCCGCCATCATCGGTACTTCTTCACATCCAGGACGCCTTGGTACTATTCTGGCCACAATTTTGCTACTTCCAAGTCCATCGAACTCAAAGGACTCACCCTCTGCCGCAGGGACGTCACCGCCACCGTTTGCGACCAGTGTCTCACAGCCGCAGTGAACGAGATAAGAATTCGGTGTCCAGACAAAGCAGAGGCTCTCATTTGGTACGACGAGTGCTTCCTCCGTTACACAAACAGATATTTTGACGTCGAAAAGATCGTCCCAAGAGTGAACCTTGACGACGGAGATGTTGACTCCAGCCTTGATTTGGGACGTTTCAACCAATCGCTGTATAGGTTGCTGAATCGTTTAGTAACGGAAGCCGTGGCGGCAAAGAAGGTCGCCGCGGGCGAAGCTGTGGTGACGGAGTGGAAGAAGGTGCATGGATTGATGCAGTGCACGGATGACTTAACGAAAAGTGAGTGCGAGACTTGTTTGAGAAATGCAATCGGAACTCTTCCTAATGGAAAACAGGGCGCAAGAGCTTTGCTTCCGTCTTGTAACGTTAGATACCAACTCTACCCTTTTTTCAATCTATCTTCACCACCACAGTCTTCAGTTGGGGATGAAAATCCAACATTGGTGGAGTCATTGCAATTCAGTTTGGCTACTCTAGAAGCAGCCACTAACCAGTTCTCAAATCAGAATAAGATTGGAAGCGGAGGATTTGGAGAAGTGTACCAGGGGTATTTGCTAGATGGACGAAAAATAGCcgtaaaaaaactttcaaaaaattcAGGACAAGGAACGATAGAATTCAAAAATGAGATCGTGCTAATAGCAAAACTGCAACATAGAAATTTGGTAACCTTGCATGGATTTTGCTCTGAAGAGCAAGAGAAAATGCTTGTTTATGAATATGTAGCTAATAAAAGTCTAGATTACTTCTTATTTGATCCTCGTAGAACAAGAGTTTTGAGTTGGCATGAGAGATATAGAATCATACTTGGAATTGCACGAGGAATTCATTACTTACATGATCAATCAAGACTTAAAGTCATACACCGTGATCTCAAACCTAGCAATATATTGTTAGATGAGATGATGAACCCAAAGATATCTGATTTTGGTATGGCAAAAAAGATTCATATAGATCAAGATCAAGGAAATACAGAGAGGATTGTCGGAACTTGGGGTTATATGCCTCCCGAATATGTGATGCATGGACATTATTCAGAAAAATCCGATGTGTTTAGCTTTGGGGTCATGATTTTGGAAATAATTAGTTCAAAGCGGAATGCACGGAGTCTTGGTTCATCAAATTTTAATGACCTCTTAAGTTATGCCTGGAAAAATTGGAGGGATAAAAAACAACTACTAGTATTAGACTCTAATATAGAAAGGAGGTCGTTTTGTTACAGTGAAGTAATTAAATGCATTCAAATTGGTTTGTTATGTGTGCAACAAAATCCAGATGATAGACTAACAATAGAAAGAGTTGTCTCGTATCTGAGTAATGCATCGGTGGAGTTACCATTGCCTCAAGAGCCTGCAAGATTCGTGGCTAATGGAACGAATCCAAGTATGATACCAAGGGTTAATTCCCCAGTCAATGATACGACAATGAGTCTTACTTTTCCTCGATAG 1815 0.4 MTAPKYLLHKLTQLLSICLCVMMMNLLTTTTTTKATPTYTTTYCTNTNTYASNAILVHFLSRFSRHHRYFFTSRTPWYYSGHNFATSKSIELKGLTLCRRDVTATVCDQCLTAAVNEIRIRCPDKAEALIWYDECFLRYTNRYFDVEKIVPRVNLDDGDVDSSLDLGRFNQSLYRLLNRLVTEAVAAKKVAAGEAVVTEWKKVHGLMQCTDDLTKSECETCLRNAIGTLPNGKQGARALLPSCNVRYQLYPFFNLSSPPQSSVGDENPTLVESLQFSLATLEAATNQFSNQNKIGSGGFGEVYQGYLLDGRKIAVKKLSKNSGQGTIEFKNEIVLIAKLQHRNLVTLHGFCSEEQEKMLVYEYVANKSLDYFLFDPRRTRVLSWHERYRIILGIARGIHYLHDQSRLKVIHRDLKPSNILLDEMMNPKISDFGMAKKIHIDQDQGNTERIVGTWGYMPPEYVMHGHYSEKSDVFSFGVMILEIISSKRNARSLGSSNFNDLLSYAWKNWRDKKQLLVLDSNIERRSFCYSEVIKCIQIGLLCVQQNPDDRLTIERVVSYLSNASVELPLPQEPARFVANGTNPSMIPRVNSPVNDTTMSLTFPR 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00004 604 SUPERFAMILY Protein kinase-like (PK-like) 271 582 IPR011009 -
Tsu03g00004 604 ProSitePatterns Protein kinases ATP-binding region signature. 294 317 IPR017441 GO:0005524
Tsu03g00004 604 ProSiteProfiles Gnk2-homologous domain profile. 151 252 IPR002902 -
Tsu03g00004 604 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 22 265 - -
Tsu03g00004 604 CDD STKc_IRAK 294 560 - -
Tsu03g00004 604 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 271 585 - -
Tsu03g00004 604 Pfam Protein kinase domain 289 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00004 604 ProSiteProfiles Protein kinase domain profile. 288 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00004 604 Pfam Salt stress response/antifungal 43 141 IPR002902 -
Tsu03g00004 604 Pfam Salt stress response/antifungal 167 249 IPR002902 -
Tsu03g00004 604 Gene3D - 30 144 IPR038408 -
Tsu03g00004 604 Gene3D - 160 252 IPR038408 -
Tsu03g00004 604 ProSiteProfiles Gnk2-homologous domain profile. 38 144 IPR002902 -
Tsu03g00004 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Tsu03g00004 604 SMART serkin_6 288 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00004 604 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 271 585 - -
Tsu03g00004 604 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 265 - -
Tsu03g00004 604 Gene3D Phosphorylase Kinase; domain 1 260 363 - -
Tsu03g00004 604 Gene3D Transferase(Phosphotransferase) domain 1 364 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00004 Tsu-Chr3 51021 58769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00004 91 604 Receptor kinase-like Gene Family AT4G11490 41.565 1.19e-138 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g00004 Pkinase 7.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00004 - - cam:101500396 726.472