Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00003 atgataacaacaaAAGCAACACCAACTTACACAACAGCTTATTGCACAAACACAACCACTTACGTACTCCAAACCACTTTCGAAACCAATCTCGAAGCCCtcttgttttctttctccaaCTCCAACCATCCTAACACGTCCTTCTCCATCGTCGGTCTTGGTACTTCCGATGCCGTCAACGGACTCTTCCTCTGCCGCGGTGATATCAATGTCACCGACCCGGTCTGCCAAGAGTGTCTCACTGCAGCAGTCAAAGAGATAATAATTCGGTGTCCAAACCAAACAGAGGCTCTCATTTGGTACGACGAGTGCTTCCTCCGTTACACAAACAGATACTTCCCCTTCAACAAGATCGTTCCTGGAGCAACCCTCGACGATGGAAATATTTCCTCCGGCGTTGACTTGGAAATATTCAATCGATCGCTACATGGATTGCTGAATGATTTGGTAACGGAAGTCGCTACGAGTTTACAGACGGAGAAGTTCGCCTCCGGCGAAACTGCGGTGACAGAGTCGATGAAGTTGTATGGATTGGTGCAGTGCACGTATGACTTAACGGAAAGTCAGTGTGAGACTTGTTTGCGAGATGCAATTGGAACTCTTCCGAATGGAAAACAGGGCGCAAGAGCTTTGCTTTCATCTTGTAACGTCAGATTCCAACTCTACCGTTTTTTTAATCTATCTTCATCACCACCATTTTCTTCAGGGGATAGCAAACTTGGACCTGGCACAATTGCGGTCGTGATTATTGTACCCGTTGTTTTCCTAATGATCTTATTCTTAGGTTGTTACTATTTCAAGAAATGGTCCAAAAAGAAAAGGAGACTAATGCTGCAGAGTATGACGGATAATTTTGGGGATGAAATTCCAACGTTGGAGTCACTGCAATTCAATTTGGCTACTCTAGAAGCAGCCACTAACAAGTTCTCATTGGAGAATAAGATTGGAAGCGGAGGATTTGGACAAGTTTACAAggggGGTTTGCTAGATGGGCGACAAATAGCggtaaaaaaactttcaaaaaattcTGGACAAGGTACCATAGAATTCAAAAATGAGATCGTGCTAATTGCCAAACTGCAACATAGAAATTTGGTAACATTGTATGGATATTGCTCTGAGGAACAAGAAAAAATGCTTGTTTATGAATATGTACCTAATAAAAGTCTAGATTACTTCTTATTTGATCCTAATAAAGCAAGAGTTTTGAGTTGGCATGAAAGATATAAAATTATAGGCGGAATTGCACGAGGAGTTCATTACTTACATGATCAATCAAGACTTAAAGTCATACACCGTGATCTAAAACCTAGCAATATATTGTTAGATGAAATGATGAATCCAAAAATATCTGATTTTGGTATGGCAAAAATTATTGATATAGATCAAAATCAAGGAAATACAATCAGGATTGCTGGAACTTATGGATATATGTCTTCCGAATATGCAATGCATGGACATTATTCGGAAAAATCAGATGTATTTAGCTTTGGAGTCATAATTATAGAAATAGTTAGTGCAAAGCGGAATGCAATTCGTTTTGATTCACCGGATTTTGATGATCTCTTAAGTTATGCTTGGAAAAATTGGAGGGATGTAAAATTGCTAGAAGTATTGGACTCTGATATAGAAAAGTCGTTTTCTTACAATGAAGTCGTTAAATGCATTCAAATTGGTTTATTATGTGTGCAACAAAATCCAGATGATAGACCAACAATGGAAAGAGTTGTTTCATATCTGAGTAGTGTTTCAGTGGAATTACCGTTGCCTCAAGAGCGTGCAGGTTTCATGGGTAATGGAATGAATCCAAGCATGATGCCAAGAGATAATTCCTCAATCAATGAAATGACCATGAGTCATTTTTTTCCTCGATAG 1875 0.3845 MITTKATPTYTTAYCTNTTTYVLQTTFETNLEALLFSFSNSNHPNTSFSIVGLGTSDAVNGLFLCRGDINVTDPVCQECLTAAVKEIIIRCPNQTEALIWYDECFLRYTNRYFPFNKIVPGATLDDGNISSGVDLEIFNRSLHGLLNDLVTEVATSLQTEKFASGETAVTESMKLYGLVQCTYDLTESQCETCLRDAIGTLPNGKQGARALLSSCNVRFQLYRFFNLSSSPPFSSGDSKLGPGTIAVVIIVPVVFLMILFLGCYYFKKWSKKKRRLMLQSMTDNFGDEIPTLESLQFNLATLEAATNKFSLENKIGSGGFGQVYKGGLLDGRQIAVKKLSKNSGQGTIEFKNEIVLIAKLQHRNLVTLYGYCSEEQEKMLVYEYVPNKSLDYFLFDPNKARVLSWHERYKIIGGIARGVHYLHDQSRLKVIHRDLKPSNILLDEMMNPKISDFGMAKIIDIDQNQGNTIRIAGTYGYMSSEYAMHGHYSEKSDVFSFGVIIIEIVSAKRNAIRFDSPDFDDLLSYAWKNWRDVKLLEVLDSDIEKSFSYNEVVKCIQIGLLCVQQNPDDRPTMERVVSYLSSVSVELPLPQERAGFMGNGMNPSMMPRDNSSINEMTMSHFFPR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00003 624 Gene3D Transferase(Phosphotransferase) domain 1 385 589 - -
Tsu03g00003 624 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 3 604 - -
Tsu03g00003 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Tsu03g00003 624 ProSiteProfiles Gnk2-homologous domain profile. 120 224 IPR002902 -
Tsu03g00003 624 SUPERFAMILY Protein kinase-like (PK-like) 295 594 IPR011009 -
Tsu03g00003 624 ProSiteProfiles Protein kinase domain profile. 309 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00003 624 Gene3D Phosphorylase Kinase; domain 1 266 384 - -
Tsu03g00003 624 Gene3D - 123 224 IPR038408 -
Tsu03g00003 624 Gene3D - 8 113 IPR038408 -
Tsu03g00003 624 ProSiteProfiles Gnk2-homologous domain profile. 9 113 IPR002902 -
Tsu03g00003 624 Pfam Protein kinase domain 310 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00003 624 SMART serkin_6 309 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00003 624 Pfam Salt stress response/antifungal 137 221 IPR002902 -
Tsu03g00003 624 Pfam Salt stress response/antifungal 15 110 IPR002902 -
Tsu03g00003 624 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 604 - -
Tsu03g00003 624 CDD STKc_IRAK 315 574 - -
Tsu03g00003 624 ProSitePatterns Protein kinases ATP-binding region signature. 315 338 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00003 Tsu-Chr3 39801 42805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00003 3 619 Receptor kinase-like Gene Family AT4G05200 44.651 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g00003 Pkinase 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00003 - - cam:101500396 862.833