Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05698 ATGAAGATCCAGTGCGACGTGTGTAACAAACACCAAGCTTCTTTATTCTGCACCGCCGACGAAGCTGCCTTATGCTCCGCCTGCGACCACCGTGTCCATCATGCTAACAAGCTCGCCTCTAAACACCAACGCTTCTCTCTCAACGTTCCTAATTCTCCAAACAATTTACCTCTCTGCGATATTTGCCATGAAAGAAAAGGATTTGTTTTTTGTCAAGAAGATAGAGCGATTGTGTGCAAAGACTGTGATTTGAATATTCATGCTGCCAATGAACACACAAAGAAACATAACAGATTTCTTCTAAGTGGGATTAAACTGCTCTCTCCTGGTCCTCCTGCCATCAACGAGGATAGTTTGGTAATTACAAATAATGAAGAAGCTGGAAGTTTCACCATATCTGAGTATTTAATAAATACTATCCCTGGTTGGAAGTTTGAAGATTTCATTGATTCACCTTCTTTTGATAAATTACAGAATCATCATATTATTGGTGAAGATACTACCTTGGTTCCTCAAGCACCACagtcttctttttattattctGAAAAAATGGATAACAGATCATCAGAAATAATTAAGGATAGCAGCAACAGCTTGAGGGATGATCATTTCATGACAGTTCCACAGATAATAATAAGTCCTCtcacttcttcaaaaaaaataataagtcctcccaaataa 681 0.3612 MKIQCDVCNKHQASLFCTADEAALCSACDHRVHHANKLASKHQRFSLNVPNSPNNLPLCDICHERKGFVFCQEDRAIVCKDCDLNIHAANEHTKKHNRFLLSGIKLLSPGPPAINEDSLVITNNEEAGSFTISEYLINTIPGWKFEDFIDSPSFDKLQNHHIIGEDTTLVPQAPQSSFYYSEKMDNRSSEIIKDSSNSLRDDHFMTVPQIIISPLTSSKKIISPPK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05698 226 Pfam B-box zinc finger 55 94 IPR000315 GO:0008270
Tsu02g05698 226 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Tsu02g05698 226 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Tsu02g05698 226 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 107 - -
Tsu02g05698 226 PANTHER B-BOX ZINC FINGER PROTEIN 21 123 181 - -
Tsu02g05698 226 Gene3D Classic Zinc Finger 1 100 - -
Tsu02g05698 226 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tsu02g05698 226 CDD Bbox1_BBX-like 5 47 - -
Tsu02g05698 226 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 107 - -
Tsu02g05698 226 PANTHER B-BOX ZINC FINGER PROTEIN 22 123 181 - -
Tsu02g05698 226 CDD Bbox1_BBX-like 58 101 - -
Tsu02g05698 226 SMART bboxneu5 4 47 IPR000315 GO:0008270
Tsu02g05698 226 SMART bboxneu5 54 101 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05698 Tsu-Chr2 65195536 65196419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05698 1 151 C2C2-CO-like Transcription Factor Family AT1G75540 49.746 4.02e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g05698 zf-B_box 1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05698 - - gmx:100807827 213.772