Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05669 ATGGTGAAACCAATATTTCTAACGAACCATATCCGTTTCATAACAAACTCTTCTTCTAGATTCTTCCATCCTTTTTCCATCTCAAACTCACCGCTCCGATTCCTCTCCACAACCCCAACCCCATACCCACTCCAATATGAACTTATCATTAACCGCCCCGACATCCCTAAACCCAACCCTCACCGTCGAACCGCAAAACCCAACGGTTCACCCGAACAAACCCAACCCGACTCCCTCCAAAGCTGGGTCGACGATAAACTAACAACCGAACCCGGTTCATCTGAACTTGATAAAGCAAAGAGGAAATACTATAACAAAAGAAGGAAGAgaatgtatggttctgattccgATTCCGATGATCGGAGAAATGAGGAACAGTTTGTTGAATTGAAACCTGAAGTTGTTGAATTGAGAACTTTGcatagaagagaagaagaattgtatttttatgATGCTTTTACTTATCCTTGGGAGAAAGATAAACATTATAAAATGGTTTATCAATTGGAGAAAAAGTTTTTTCCTGATCAGTGTTTGGATAAAGCTTTTCTTAAACCAGGTCAATCTAATCCAGTTTCCAATTTGAAAAATTCGAATGCAGTTTCGAATTCGAAAAATTCTAATGCAAATGTTAGGAACAAAAAAGTTGGTGTTTTTGGTGGTGTTGGTGGTGCTGTGGAGGGTAAAGATGAGGTTGGTGATAACAAGTTGGTGTTTTTTGAGGAGAATGTGAAAGgggaagaagaaagagaaaaggaaaaggaaaagggTAAGAAGGGTGGGAAGAAGGTTGAAGAGTTTTTTAAGGGTTTGAAGAAAGATGTTGAAATTGTAGAgccatttttttcttcaaggaGGACTGGTCTTCCTCCTGTTTGGGATAGTCAACATGGGACAGTGCTTTTGATTAACAAACCTAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTTCGCCGCCTTGTCAAAGTGAAAAAGGTAGGCCATGCCGGAACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTGGACAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAGTGCCTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCTATGTTTTCTGCTATTAAAGTTGGAGGTGAAAAGATGTACGAGAAAGCAAGGAGAGGAGAAAGCATCGAACTTTCGCCTAGAAGAATTTCAATTTTCCAATTTGACATAGAGCGTAGCTTGGATGACAGgcaaaatttgatttttagagTGACTTGTTCTAAAGGAACATATATTCGGTCACTCTGTGCTGATTTTGGAAAGGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTCAGAAGAGATTCAATTGGACAATATTTAGCAGATGATGCATGGGACTTTCAAGAACTGGAAGAGGCTATCACCAAAACTTATCTTTAA 1554 0.3777 MVKPIFLTNHIRFITNSSSRFFHPFSISNSPLRFLSTTPTPYPLQYELIINRPDIPKPNPHRRTAKPNGSPEQTQPDSLQSWVDDKLTTEPGSSELDKAKRKYYNKRRKRMYGSDSDSDDRRNEEQFVELKPEVVELRTLHRREEELYFYDAFTYPWEKDKHYKMVYQLEKKFFPDQCLDKAFLKPGQSNPVSNLKNSNAVSNSKNSNANVRNKKVGVFGGVGGAVEGKDEVGDNKLVFFEENVKGEEEREKEKEKGKKGGKKVEEFFKGLKKDVEIVEPFFSSRRTGLPPVWDSQHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKSALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYLADDAWDFQELEEAITKTYL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05669 517 TIGRFAM TruB: tRNA pseudouridine(55) synthase 299 508 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tsu02g05669 517 MobiDBLite consensus disorder prediction 66 88 - -
Tsu02g05669 517 Gene3D Pseudouridine synthase 294 516 - -
Tsu02g05669 517 SUPERFAMILY Pseudouridine synthase 299 512 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tsu02g05669 517 MobiDBLite consensus disorder prediction 52 97 - -
Tsu02g05669 517 Pfam tRNA pseudouridylate synthase B C-terminal domain 470 513 IPR032819 -
Tsu02g05669 517 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 273 515 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tsu02g05669 517 Hamap tRNA pseudouridine synthase B [truB]. 297 517 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tsu02g05669 517 CDD PseudoU_synth_EcTruB 300 511 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tsu02g05669 517 Pfam TruB family pseudouridylate synthase (N terminal domain) 319 469 IPR002501 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05669 Tsu-Chr2 64940607 64946737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05669 300 491 NAC Transcription Factor Family AT3G57150 33.333 2.24e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05669 K03177 - gmx:100793939 647.121