LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g05654	ATGTTGAAAGCGCCTTTGATTCCCCAACCACCACCATCGCCACCCAAAATTACATATTCATTCTCTGGTCTCTTATCGCTTTCTTTCCATCACCTTCTCCTCCTGAGTTTCTTCGTCACTTCTGAAAAGTTTTCCTCCTATGCTGAACTCAGGAACGATTTTATCGATCACACTATTCTCTATGTAATGCACATAATCTTTGAGATTCTTTTCGGCCTTGTGTTTATGTTCACTATGCCGAATGCTGAAGAAAATGGAGCGATTCAACATGTCATGTTGTTATTCACAAATTACGTAATTTCCTCTATGATGAGCTATTTATTTCAGCACTATATTGCTATAGTAACCTTTTTGTGGTGGACAATCGTTTTCGTTCTGGATCTACGCTATCTGAAGAAGGAATTCTGCCTTCAGTTTGCAAAGATTCTATGTGCATGGCTTTCAAACCCTGAGACTCAGGAGACAGAACTAGCCGAAAAGATCAGAATTGCTGAAGATGatatagagaagaagaaggtccTTCTTGATGtgatgaaggaagaagaaaaaaaaagaagactgaTCGAAATTCAAATAGAAGGTGCGGCTGAAGAAATGATACAGAAGTTAGCTGAAGCAACAAGAAAGAAGGAAGAAACAGAAAGAAAACTGGGGGAAATTCAAGCCAGTTTAGCTGAAGAAAACAGACAGAAGTGTGAAGCAAGAAGAAGACTGATGGACCTTGAAACAAGGTTAGCCAAAGCAATATCACAGAAGACGGAAAATGAAGAAAGGTTAGTGGAAGCAACAACACAGAATAGGGAACTTGAAGGAAAGTTAGCCAAAGCAACAACACAGAAGATCGAAATTGAATCTAGGTTATTTGAAGCAACAACAGAGAagatgaaatttgaaaaaaggttATCTGAAGCAACAGCACAGATGATGGAAATGGAAGTTAGTTTATCCCAAGCAACAGCAGAGAAGATGAAATTTGAATCAAGGTTAGTTGAAGCACAAAACACAGGATGGAAATGCAAGCAAGGTTTGCAGGATTCATGTGGCAGAAGTTCTCCTTTCTTTGGAGTACTTACACATGCTTGGGATGGGATAATCTCTTGTTTGGTTGGACAGCATTCAGAAAATGAATTTGTCAGTGAGTGTGCTAGTGTTGATAACAAGTCATATGAAAGCGGAGAAGTTTCGACTTCGTGTGATTTTAATGATAGTAGGAAAACCAGCATATGTAGAGCGAGTACCGGAAGTGAGGTTAGCGAAGAAAGCAACACGAGTAGTTTGAGCAGTGCTTTGTATAAACCTCATAAGGCAAATGATATAAGATGGGAAGCGATTCAAGCTATCCGAGCTCGTGACGGGATGTTGGAAATGAGGCATTTTAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAATCATCTACAGAGACCTTAAACCTGAGAATGTGTTGGTGCGAGAAGACGGTCATATAATGCTTTCCGATTTCGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTCTTGTGAAGTCATCAAACCCGATCGCTGAAACGAAAAGCTCAGGATATTGCATTCAGCCAGCATGTGCAATGCAGCCAGACTGCATCCAATCTGCATGCTTTTCACCGCGGTTCCTATCCGGAAAAtccaagaaagagaaaaagttcAGATCAAAGAATGACATGCATCACCAAGTGACACCTCTGCCAGAGCTAATCACGGAGCCAACAAGTGCGCAATCGATGTCCTTTGTAGGCACACACGAGTACTTGGCGCCTGAAATTATTAAAGGTGAAGGACACGGCAGTGCTGTGGAATGGTGGACGTTCGGGATATTCTTATACGAACTCTTGTTTGGTCGAACACCATTCAAAGGTTCAGCAAACCGAGCGACACTGTTTAATGTTGTTGGACAGCCTTTGAGGTTTCTGGAATCTCCTACCGTCAGCTTTGCTGCAAGGGATTTGATCAGAGATATTGATTTCAACTACATTCATGGATCTTCAATTGATGAACTGCTCCACCTTTCATCACCACCGACCCCTTTATGGAAATTTCTTCAGCAATCCATGACAAATGCATTGCTAAAGATCCCGCAGACCACTGGAAAACTAATTAAAGAATCAGAGAAGGAATCTAGCCACAAAAAGACAATAACATCACTTGAGGTAGATCCATGTGAAGGCTTGACTGATGATGATATTCGGACAGTCACACAAAATGCAAGTGGGCCAAGATCAGCATTGTTTACACCAGAATTTGTGATTATTCTTCTTGCTTCTACTCACatcatgttttattttgtgcATGTGAAATCAGAGATTTCTATTCATGAGACTGAGTATATAGATGGACCCCTTATGGAACTACTAAGTGCATCATTTGCAAGCTGCAAGTGCACTAGGATGGCAAGTACTGTCACACCTGTGCTCACTCAAAAGTTACTTGGAAACGTTCTCTTTCCACCAGATAGACAACCTGGAGACTCTCTTTTGGATGCATGGTTCATTTCAAGCATGTCATTACCTCCTCTTAAACGTGGCTTGAAAGTGGCAGTGGTTGGAATTCCAAAAACTACTGATAATGATATCCTAAGAGTGCTGAGAATGGTATTGGTGTTGTGA	2640	0.3977	MLKAPLIPQPPPSPPKITYSFSGLLSLSFHHLLLLSFFVTSEKFSSYAELRNDFIDHTILYVMHIIFEILFGLVFMFTMPNAEENGAIQHVMLLFTNYVISSMMSYLFQHYIAIVTFLWWTIVFVLDLRYLKKEFCLQFAKILCAWLSNPETQETELAEKIRIAEDDIEKKKVLLDVMKEEEKKRRLIEIQIEGAAEEMIQKLAEATRKKEETERKLGEIQASLAEENRQKCEARRRLMDLETRLAKAISQKTENEERLVEATTQNRELEGKLAKATTQKIEIESRLFEATTEKMKFEKRLSEATAQMMEMEVSLSQATAEKMKFESRLVEAQNTGWKCKQGLQDSCGRSSPFFGVLTHAWDGIISCLVGQHSENEFVSECASVDNKSYESGEVSTSCDFNDSRKTSICRASTGSEVSEESNTSSLSSALYKPHKANDIRWEAIQAIRARDGMLEMRHFRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNPIAETKSSGYCIQPACAMQPDCIQSACFSPRFLSGKSKKEKKFRSKNDMHHQVTPLPELITEPTSAQSMSFVGTHEYLAPEIIKGEGHGSAVEWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFLESPTVSFAARDLIRDIDFNYIHGSSIDELLHLSSPPTPLWKFLQQSMTNALLKIPQTTGKLIKESEKESSHKKTITSLEVDPCEGLTDDDIRTVTQNASGPRSALFTPEFVIILLASTHIMFYFVHVKSEISIHETEYIDGPLMELLSASFASCKCTRMASTVTPVLTQKLLGNVLFPPDRQPGDSLLDAWFISSMSLPPLKRGLKVAVVGIPKTTDNDILRVLRMVLVL	879

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g05654	879	SUPERFAMILY	Protein kinase-like (PK-like)	446	664	IPR011009	-
	Tsu02g05654	879	Gene3D	Transferase(Phosphotransferase) domain 1	584	664	-	-
	Tsu02g05654	879	PANTHER	SERINE/THREONINE-PROTEIN KINASE D6PKL3	205	460	-	-
	Tsu02g05654	879	PANTHER	FLIPPASE KINASE 1-RELATED	460	663	-	-
	Tsu02g05654	879	Gene3D	Dynamin, middle domain	694	772	-	-
	Tsu02g05654	879	SMART	serkin_6	389	686	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g05654	879	Coils	Coil	294	335	-	-
	Tsu02g05654	879	PANTHER	SERINE/THREONINE-PROTEIN KINASE D6PKL3	460	663	-	-
	Tsu02g05654	879	PANTHER	FLIPPASE KINASE 1-RELATED	205	460	-	-
	Tsu02g05654	879	Coils	Coil	161	230	-	-
	Tsu02g05654	879	Pfam	Protein kinase domain	585	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g05654	879	Pfam	Protein kinase domain	447	512	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g05654	879	Gene3D	Transferase(Phosphotransferase) domain 1	450	506	-	-
	Tsu02g05654	879	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	478	490	IPR008271	GO:0004672\|GO:0006468
	Tsu02g05654	879	Coils	Coil	238	286	-	-
	Tsu02g05654	879	ProSiteProfiles	Protein kinase domain profile.	295	689	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g05654	Tsu-Chr2	64756071	64762518	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g05654	460	665	AGC Kinase Gene Family	AT3G27580	77.830	4.43e-107	340

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Tsu02g05654		Pkinase	3.2e-13	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g05654	K08286		-	gmx:100810909	370.163