Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05647 ATGGAGAAAGATATTGTGGAAAACCTTTGGAATGGTGATAGTGAAGCTCAAATTCAAGCAGCAATGGAACTTAGTAGATTGTGCAATAAGCAAAAGCTCAAATTGGCAGAAAATGGAGTTATGGTTCCTCTTGTTTCCATGCTTCATTCTGAAAACTATGAAGTCATAGAAGCTTCTCTTTGTGCTTTTCTCAGCCTCTCCTTTGGCAGTGATAGAAACAAGATTCGGATCGTCAGGTACGGAGTTTTGCCAATTTTGTTGAACCTCCTCCATTGTGAAAGCCAGACAGTGATACAATTGTCATTAGCTGCCATGTTAACACTTTCTTCTTGCAAGGCAAATAAGGTAGCAATAGCTTCATCTGGTGCAGTTCAAATTTTGGTTACATATATCAATAGTAGCAACACTCATAGTCAGTCTCAACTAGATGCTATAGCTACTCTTCATAATCTTACAACCTGCCAAGAGATTATTCCATTAATTGTATCTTCTGGTGTTATATTCTCCTTGCTTGAACTTATCCATGGCTCGGTAAAATCATCTTTGTTGGCTGAGAAAGCAATAGGGTTGCTAGAAAATATTGTTTCTTCATCAGAGAGTGCACTTTGTGAGACTGCTAGTACCGGAGGAGCGATTAGGATATTGGTTGAGACTATTGAAGATGGATCTTCACTAGGAAAAGAGCATGCAGTTGGTATACTTTTACTTATATGTCAAAGCTGTAGAGAAAAATATAGGGTATTGATTTTAACGGACGGAGTGATGCCAGGATTGCTTCAGTTAAGCGTCGATGGAACGTGGAGGGCTAAATCCGTGGCTGGAGAATTGTTGTTGCTTCTAAGAGACTGCTCTAGTTATAGCTCGAGGCGGAAACAAATTAACCATGAGCTTATAGAACAGATGATGGAAGAAATTGATGCAGAAGGTGACAAATTGGCAGATACTACTTTGAGATTGGTAGAGGAGATGATTGCAAAGCTCAATACATGA 990 0.3929 MEKDIVENLWNGDSEAQIQAAMELSRLCNKQKLKLAENGVMVPLVSMLHSENYEVIEASLCAFLSLSFGSDRNKIRIVRYGVLPILLNLLHCESQTVIQLSLAAMLTLSSCKANKVAIASSGAVQILVTYINSSNTHSQSQLDAIATLHNLTTCQEIIPLIVSSGVIFSLLELIHGSVKSSLLAEKAIGLLENIVSSSESALCETASTGGAIRILVETIEDGSSLGKEHAVGILLLICQSCREKYRVLILTDGVMPGLLQLSVDGTWRAKSVAGELLLLLRDCSSYSSRRKQINHELIEQMMEEIDAEGDKLADTTLRLVEEMIAKLNT 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05647 329 Gene3D - 205 312 IPR011989 -
Tsu02g05647 329 SUPERFAMILY ARM repeat 5 311 IPR016024 -
Tsu02g05647 329 Pfam Armadillo/beta-catenin-like repeat 70 105 IPR000225 GO:0005515
Tsu02g05647 329 Gene3D - 3 204 IPR011989 -
Tsu02g05647 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Tsu02g05647 329 PANTHER U BOX DOMAIN-CONTAINING 1 309 - -
Tsu02g05647 329 SMART arm_5 28 68 IPR000225 GO:0005515
Tsu02g05647 329 SMART arm_5 70 110 IPR000225 GO:0005515
Tsu02g05647 329 SMART arm_5 111 153 IPR000225 GO:0005515
Tsu02g05647 329 SMART arm_5 154 196 IPR000225 GO:0005515
Tsu02g05647 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 166 IPR000225 GO:0005515
Tsu02g05647 329 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05647 Tsu-Chr2 64616853 64618380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05647 3 282 U-box Gene Family AT2G23140 31.818 2.01e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05647 - - gmx:100778534 500.745