Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05645 ATGGAATCACCTGGAAAAGACCATATGATTGGAAGCGGTGAACAAAACGACGTTGGTAGAGCTTTTAATCACAGAGATGAACACGACCATGAACAACAACACCATAACTCTCAACCTCTTACCGGTGATGGTGCAAGTCCTGGAAAGATATTTATCGGCGGTTTAGCGCGCGAAACGACAATTGCTCAATTTATCAAACACTTCGGTAAATATGGTGAGATTACTGATTCAGTAATCATGAAGGACAGGAAAACTGGGCAGCCTCGTGGATTCGGGTTTATTACTTATGCTGATCCGTCGGTGGTTGATAAAGTCATTGAGGATTCTCATATCATCAATGCCAAACAAGTTGAGATTAAGCGGACTATACCAAGGGGAGCTGTTGGTTCTAAGGATTTTAGgacaaagaaaatatttgtaGGTGGTATCCCTTCAAATGTGACTGAAGATGAATTCAGAGACTTTTTCACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGGGACCACGCTACCAATAGATCTCGTGGCTTTGGGTTTGTTACCTTCGACACTGAGGAAGCTGTAGACGATCTTCTATCTATGGGGAACAAGATTGAGTTTGCTGGCACTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGGCAAACCCACCACCTCCATCCTCTAAGCGCTACAATGACTCAAGGTCTTCATACGGCAGTGGTGGGTATGGGGATGCTTATGATGGATTTGGCGGTAGCTTTGGTGTTGGTAGTGCTTACAGCAGGTCAGGCAGTGTCTATGGTGGTAGGGGAGGTCCTTATGGTGGTTATGGAAGTGAATTTGCTGGGTATGGGGGATATGCTGGAGCTATGGGAGGACCCTACAGAGGAGATCCTTCCCTGGGGTATGCAGGTCGTTATGGTGGTAGCTTTAGCAGAGGCTATGATCTTAGTGGGTATGGGGGACCTGGTGAGAGTTACGGAGCATATGGTGGTGCTGGTGCAGGAGCTGCTGCTGGAGGCGGTTCTTCCGGCGCTGGTGCGTATCAAAGTGGCTATGATGCTAGCCTTGGAGGTGGTTATGGAGGAGGTGCTAGTGGAGGCTCCTTCTATGGCAGCCGAGGAGGATATGGCGGTGCCGGGCGATATCATCCGTATGGAAGATAG 1155 0.4736 MESPGKDHMIGSGEQNDVGRAFNHRDEHDHEQQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDSHIINAKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHATNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKANPPPPSSKRYNDSRSSYGSGGYGDAYDGFGGSFGVGSAYSRSGSVYGGRGGPYGGYGSEFAGYGGYAGAMGGPYRGDPSLGYAGRYGGSFSRGYDLSGYGGPGESYGAYGGAGAGAAAGGGSSGAGAYQSGYDASLGGGYGGGASGGSFYGSRGGYGGAGRYHPYGR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05645 384 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 9 384 - -
Tsu02g05645 384 MobiDBLite consensus disorder prediction 1 20 - -
Tsu02g05645 384 Gene3D - 136 219 IPR012677 -
Tsu02g05645 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 124 IPR000504 GO:0003723
Tsu02g05645 384 SUPERFAMILY RNA-binding domain, RBD 133 240 IPR035979 GO:0003676
Tsu02g05645 384 MobiDBLite consensus disorder prediction 26 46 - -
Tsu02g05645 384 Gene3D - 13 131 IPR012677 -
Tsu02g05645 384 SUPERFAMILY RNA-binding domain, RBD 39 126 IPR035979 GO:0003676
Tsu02g05645 384 MobiDBLite consensus disorder prediction 210 233 - -
Tsu02g05645 384 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 9 384 - -
Tsu02g05645 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Tsu02g05645 384 SMART rrm1_1 137 210 IPR000504 GO:0003723
Tsu02g05645 384 SMART rrm1_1 49 120 IPR000504 GO:0003723
Tsu02g05645 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 207 IPR000504 GO:0003723
Tsu02g05645 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05645 Tsu-Chr2 64606463 64610042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05645 48 204 Eukaryotic Initiation Factors Gene Family AT1G71770 26.590 2.17e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05645 K12741 K14314 gmx:100793209 451.825