Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05634 ATGAAGCTCACTGTCAAGACTCTCAAAGGCAGTCATTTTGAAATCAGGGTTCAGCCTTCTGATTCTATAATGGCGGTAAAAAAGAATATTGAAGATGTACAAGGCAAAGATAATTACCCTTGTGGACAGCAATTGCTCATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGCTGATAATAAGGTCTCCGAAGATGGCTTTCTTGTTGTCATGCTTAGTAAgAGTAAATCCTTGGGATCTGCTGGAACTTCATCTACTCAGACCGCTAGCAATCCACCTACAACTGTACCAACACCAGATTCCACACCTGTAGTACAAACGCAATCTGCAAACAACAATGCATCTGCAGCAGTTGTCGCAACTACAAATGTTACTACAGATACTTATGGACAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGCGGCAGCTGGGATAGAGATACCGTTAATCGTGCTCTGCGTGCAGCTTTCAATAACCCAGAGCGTGCTGTCGATTACTTGTATTCTgGAATTCCTGAAGCAGCAGAAGTTGCTGTACCGGCTCCTCAACACCCAAGTAATCAAACTGAAACGGGTGGGGTCACTTCCGGAGTTGTTCCTGGGGTCCCTAACTCATCTCCCTTGAATATGTTTCCACAGGAGACAGCTGGAACTGGTGCTGGCGCTGGATCGCTTGAATTTCTGAGGAACAATCCCCAGTTTCAAGCATTGCGGACAATGGTGCAATCCAATCCACAAATTCTCCAGGTATCTAACCATCTAATTTTGCAATCACCTACTACCTGA 831 0.438 MKLTVKTLKGSHFEIRVQPSDSIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKSLGSAGTSSTQTASNPPTTVPTPDSTPVVQTQSANNNASAAVVATTNVTTDTYGQAASNLVAGSNLEQTIQQIMDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEVAVPAPQHPSNQTETGGVTSGVVPGVPNSSPLNMFPQETAGTGAGAGSLEFLRNNPQFQALRTMVQSNPQILQVSNHLILQSPTT 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05634 276 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Tsu02g05634 276 SMART uba_6 144 184 IPR015940 -
Tsu02g05634 276 SUPERFAMILY UBA-like 141 193 IPR009060 GO:0005515
Tsu02g05634 276 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 265 - -
Tsu02g05634 276 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 265 - -
Tsu02g05634 276 MobiDBLite consensus disorder prediction 80 109 - -
Tsu02g05634 276 Gene3D - 1 80 - -
Tsu02g05634 276 SMART ubq_7 1 75 IPR000626 GO:0005515
Tsu02g05634 276 SUPERFAMILY XPC-binding domain 237 264 IPR036353 GO:0003684|GO:0006289|GO:0043161
Tsu02g05634 276 Gene3D - 229 269 IPR036353 GO:0003684|GO:0006289|GO:0043161
Tsu02g05634 276 CDD UBA1_Rad23_plant 138 187 - -
Tsu02g05634 276 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Tsu02g05634 276 Pfam XPC-binding domain 240 264 IPR015360 GO:0003684|GO:0006289|GO:0043161
Tsu02g05634 276 Pfam UBA/TS-N domain 144 182 IPR015940 -
Tsu02g05634 276 Gene3D - 137 187 - -
Tsu02g05634 276 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 142 185 IPR015940 -
Tsu02g05634 276 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Tsu02g05634 276 TIGRFAM rad23: UV excision repair protein Rad23 1 264 IPR004806 GO:0006289
Tsu02g05634 276 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05634 Tsu-Chr2 64453473 64459615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05634 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 9.29e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05634 K10839 - gmx:100804038 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05634 02 64453473 64459615 Tsu02g05634 02 64453473 64459615 ECH