Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05633 ATGCTTAAAACAAACCAAGAACAaatgaacaagaaaaagaaCCAAAACCACTTGGGTCGTCGTATGTTTTCAAATCCCCTCAGCGagatccaaaacaacaacaacacccaGCTGAGGCACAGTCGTAGCTTCGGCCCCACCGACCACAATAAGGAAAACGCCATTGCCAATGTTTCTCCTTCACTTCCAAAGTCATTATCAACAAACACAGACAACAACAAGATTGTTAAGCCTTCCTCTCTACAGTACTGCATGCAAATCAATGACAACGATCCTCCTCTTGCTTCTTCTCATTCTTCCCACTTTTCCAACTCTTTGAAAATTTGGGACTACTCTGACTCTGACCCTGCTCCTGCTTCCTCCTGGTCCACTTTACCCAACAAGTCTTTGATCTGTAGACCCTTGCCTATTGATATTGGAAGATGCACATGTGTTATTGTCAAGGAACCAATGCCCCAAGGACTCTCTAATGGCACTTTCTTCTCTCTTTATACCTATGAAGGTCAGGGACGACAGAATAGGAAACTGGCTGTAGCCCACCATAAGCGCCGAACTGGCCGCTCTCACTTCACATTAGCTCAGAACGTTAAAGGATTACTCTCCAATTCTGATGATACTTTCCTCGGGACAGTAACCGCTAATCTCACCGGTtcaaaatacctcatttgggaTCAGGGATATCGCCGTAACACCCGTAGTAAACAACCAAAACCGCCTCTTGCTGTTGTTGAGTATGTACCTACAATAGCAACATGTACAGGAACTCACAGAAGCATCAAAGCTTATATACCCAACCATCAATCTATGTCTTTCAAGACCACCAACCAGGTACAGCATATTAAGGGACTGCCAATGAATTGGGAGGGAAAATTGGACAAAGTCCATCAACTATACTCAAGGGATCCACTCTACAACAAGAGTACAAAACGATTTGAGCTTGACTATAGAGATAAAGGAAGGGCAGAACTTGGAATCCAGAGATCAGTCAAAAACTTTCAGCTCACTTTAGAGGAAAATGGGAAGCAGACAATCCTGCAGCTAGGGAGGGTGGGAAAATCCACATTTGTTATGGACTACAGATATCCTTTGACTGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGCATAGTGTAG 1155 0.4173 MLKTNQEQMNKKKNQNHLGRRMFSNPLSEIQNNNNTQLRHSRSFGPTDHNKENAIANVSPSLPKSLSTNTDNNKIVKPSSLQYCMQINDNDPPLASSHSSHFSNSLKIWDYSDSDPAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEPMPQGLSNGTFFSLYTYEGQGRQNRKLAVAHHKRRTGRSHFTLAQNVKGLLSNSDDTFLGTVTANLTGSKYLIWDQGYRRNTRSKQPKPPLAVVEYVPTIATCTGTHRSIKAYIPNHQSMSFKTTNQVQHIKGLPMNWEGKLDKVHQLYSRDPLYNKSTKRFELDYRDKGRAELGIQRSVKNFQLTLEENGKQTILQLGRVGKSTFVMDYRYPLTGYQAFCICLASIDAKLCCIV 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05633 384 Gene3D Tubby Protein; Chain A 124 383 IPR025659 -
Tsu02g05633 384 PANTHER TUBBY-LIKE PROTEIN 8 12 382 - -
Tsu02g05633 384 MobiDBLite consensus disorder prediction 1 21 - -
Tsu02g05633 384 PRINTS Tubby superfamily signature 297 314 IPR000007 -
Tsu02g05633 384 PRINTS Tubby superfamily signature 361 383 IPR000007 -
Tsu02g05633 384 PRINTS Tubby superfamily signature 207 231 IPR000007 -
Tsu02g05633 384 PRINTS Tubby superfamily signature 340 359 IPR000007 -
Tsu02g05633 384 PANTHER TUBBY-RELATED 12 382 - -
Tsu02g05633 384 SUPERFAMILY Tubby C-terminal domain-like 119 382 IPR025659 -
Tsu02g05633 384 Pfam Tub family 133 377 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05633 Tsu-Chr2 64450536 64452680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05633 67 277 TUB Transcription Factor Family AT1G16070 52.074 9.21e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu02g05633 Tub 1.3e-40 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05633 K19600 - gmx:100803500 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05633 02 64450536 64452680 Tsu02g05633 02 64450536 64452680 ECH