Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05617 ATGTCAGTGGATGCTGACCGAACTGTCAACTTGTGTAATAGTTTCCATGATATTTGGAGTCTGCCTTTACAAATTGGAGTGGCGCTTTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTGTCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATATCAAAATTGATTGCAAGAGCCACTGAGCAAATGATGAAGGAGAAGGATGAAAGGATTCGCAGGACTGGGGAACTATTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTTCAAGTTGGTTGATGGAGACAAGATCTTTGGAAGTGAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCATCACTATTTTCTCTTTGCACATTTGGACTCTTTGCATTGATGGGTCATCAACTTGATGCTGCAACGGTTTTCACTTGTCTTGCTTTGTTTAACACTCTGATTTCACCACTTAATTCATTCCCTTGGGTGATTAATGGATTGATTGATGCCTTCATATCCTCCAGACGGTTGAGTAGGTTCCTCTCTTGTCCTGAACATAGACGCAAAGTGGGAGAGAACAGTTCCTGTTCATCATCATTCCCGAGTAAACAGCCTGATTCTTTACAAGATTTAGCTGTCTCTATGCAAGATGCATGCTGTTCTTGGTCAAGTAGTGATGAACAAGCATTAAATCCGGTGTTGAATCATGTGAATCTTAGCCTATCCAAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCCGGTAAATCATGCCTGTTATATTCGATTCTCGGAGAAATGCGGCTTGATCATGGATCTATTTATTCCAATGGATCTGTAGCTTATGTACCACAGGTCCCTTGGATTATATCTGGAACAGTGCGTGACAATATATTATTTGGGAAAAGCTACCATCCTGAAAGGTATGCAGATACAGTAAAGGCATGTGCATTGGATGTTGATATCTCCTTGATGATTGGTGGTGACATGGCTTATGTTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGTATTGTATCACGACTCAGATATTATTATGCTTGACGACGTCCTGAGTGCAGTTGATGTACAAGTTTCCCGGTGGATCTTACACAATGCCATCCTCGGTCCTCTTATGAAGGGAAAAACCCGATTGCTCTGTACCCACAACACTCAGGCAATATCTTCTGCTGATACGATTGTTGTATTGGACAAAGGACACTTAAAGTGGATGGGAAGTTCAGCTGACTTTCCAACTTCTTCATATACAATATTCTCCCCATTGAATGAAATGGATTCAACTTCACATAATCAGAAATCTTGCAGCACAAATTCTTCTATATCCAAGGAGCAGTCTCTTCCTGATAGAATTATCATGGATTCTCTGGAGGGAGCAGATGATATAATTGAAGTTGAGTTGAGGAAGGAGGGAAAAGTTGAACTCAGAGTGTATAAGAACTATGCTGCTTTTACTGGTTGGTTCATTGCCGTTATTATATGTCTATCAGCTATTCTGATGCAAGCTTCGCGTAATGGAAATGATTTATGGCTTTCATATTGGGTGGATACCACAACAGAAGACGGTCAAACAAGTTACTCTATGTCTTTCTATCTGGCTATACTATGTCTCTTTTGTATTATGAATTCCCTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGCTTACAAGCGGCAACTAAGGTGCACAATAGACTTCTCAGCAAGCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCTGGTGGAAGAATATTGAATAGGTTATCTTCAGATCTTTATACAATAGATGATTCTCTTCCATTTATTATGAACATTCTCCTGGCTAATTTTGTAGGACTGTTGGGTATTGCAATTATTTTATCTTACGTACAGGTCTTCTTCTTAGTTCTGTTATTGCCCTTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCGAGAGAATTGCGAAGACTGGATAGTGTTTCTCGCTCTCCAATATATACATCTTTCACCGAAACACTTGATGGATCATCAACTATTAGAGCCTTTAAATCCGAGGACTTTTTCTTCACCAAATTTACTGACTACATAACATTATATCAGAAGACTTCCTATACAGAGATAGTGGCGAGTCTGTGGCTTTCCCTGCGTCTTCAGTTATTAGCTGCATTTATCATCTCATTCATAGCCCTGATGGCTGTTGTCGGGTCTCATGACAGTCTGCCTATCAACTTCGGTACCCCAGGActggTTGGATTGGCCCTCTCTTATGCAGCTCCAATTGTGTCTCTGCTGGGAAGTTTTCTAACAAGTTTCACTGAAACAGAAAAGGAAATGGTTTCAATTGAAAGAGCCCTTCAATACATGGATATTCCCCAAGAAGAACAAGATGGATGTCTAAACTTGAATCCAGATTGGCCAAATCAAGGAGTTATTGAATTCCAACAGGTTACTTTGAAATATATGCCATCTTTACCAGCAGCGCTCTGCAATCTTAGTTTTAAAATTGAAGGAGGGACACAGGTTGGAATAATTGGAAGAACAGGTGCTGGAAAATCTAGTGTGTTAAATGCACTTTTTCGTCTTACCCCAATATGTGCAGGCTCCATCACAGTTGATGGCATGGACATTCGAAATATTCCTGTGAGAGAACTACGAACACATTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGATCACTAAGGGATAACCTAGATCCATTCAAAAGGAACGATGACTCGAAAATTTGGGATGCACTGGAGAAGTGTCATGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGCTGGATATTCTTGTAAAGGAAGGAGGGACGTCATTTTCAGTTGGCCAGCGGCAGCTTCTTTGCCTTGCACGTGCACTTCTCAAATCTTCAAAGGTTCTTTGTTTGGATGAATGCACTGCCAGTGTCGACATTCAAACTGCTTCACTGCTGCAAAGCACAATATCCAGTGAATGCAAAGGCATGACGGTGGTCACAATTGCTCACCGGATTTCAACTGTCATAAATATGGATAACATTCTAATTCTTGATCATGGGAACCTGGCTGAACAAGGAAATCCGCAGATTCTTCTGAAAGATGGAACCTCTATATTTTCTAGTTTTGTAAAAGCTTCATCCATGTAA 3234 0.4041 MSVDADRTVNLCNSFHDIWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISKLIARATEQMMKEKDERIRRTGELLTYIRTLKMYGWELLFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPSLFSLCTFGLFALMGHQLDAATVFTCLALFNTLISPLNSFPWVINGLIDAFISSRRLSRFLSCPEHRRKVGENSSCSSSFPSKQPDSLQDLAVSMQDACCSWSSSDEQALNPVLNHVNLSLSKGSFVAVIGEVGSGKSCLLYSILGEMRLDHGSIYSNGSVAYVPQVPWIISGTVRDNILFGKSYHPERYADTVKACALDVDISLMIGGDMAYVGEKGVNLSGGQRARLALARVLYHDSDIIMLDDVLSAVDVQVSRWILHNAILGPLMKGKTRLLCTHNTQAISSADTIVVLDKGHLKWMGSSADFPTSSYTIFSPLNEMDSTSHNQKSCSTNSSISKEQSLPDRIIMDSLEGADDIIEVELRKEGKVELRVYKNYAAFTGWFIAVIICLSAILMQASRNGNDLWLSYWVDTTTEDGQTSYSMSFYLAILCLFCIMNSLFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVFFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFTKFTDYITLYQKTSYTEIVASLWLSLRLQLLAAFIISFIALMAVVGSHDSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSIERALQYMDIPQEEQDGCLNLNPDWPNQGVIEFQQVTLKYMPSLPAALCNLSFKIEGGTQVGIIGRTGAGKSSVLNALFRLTPICAGSITVDGMDIRNIPVRELRTHLAIVPQSPFLFEGSLRDNLDPFKRNDDSKIWDALEKCHVKEEVEVAGGLDILVKEGGTSFSVGQRQLLCLARALLKSSKVLCLDECTASVDIQTASLLQSTISSECKGMTVVTIAHRISTVINMDNILILDHGNLAEQGNPQILLKDGTSIFSSFVKASSM 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05617 1077 Pfam ABC transporter 245 377 IPR003439 GO:0005524
Tsu02g05617 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 439 IPR027417 -
Tsu02g05617 1077 SUPERFAMILY ABC transporter transmembrane region 13 196 IPR036640 GO:0005524|GO:0016021
Tsu02g05617 1077 Gene3D - 199 474 IPR027417 -
Tsu02g05617 1077 ProSitePatterns ABC transporters family signature. 352 366 IPR017871 GO:0005524
Tsu02g05617 1077 SMART AAA_5 254 428 IPR003593 -
Tsu02g05617 1077 SMART AAA_5 866 1050 IPR003593 -
Tsu02g05617 1077 CDD ABC_6TM_MRP7_D1_like 1 188 - -
Tsu02g05617 1077 CDD ABCC_MRP_domain2 838 1057 - -
Tsu02g05617 1077 ProSitePatterns ABC transporters family signature. 976 990 IPR017871 GO:0005524
Tsu02g05617 1077 Pfam ABC transporter transmembrane region 3 168 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g05617 1077 Pfam ABC transporter transmembrane region 519 768 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g05617 1077 SUPERFAMILY ABC transporter transmembrane region 514 822 IPR036640 GO:0005524|GO:0016021
Tsu02g05617 1077 CDD ABC_6TM_MRP7_D2_like 517 817 - -
Tsu02g05617 1077 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 518 805 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g05617 1077 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 840 1073 IPR003439 GO:0005524
Tsu02g05617 1077 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 180 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g05617 1077 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 224 451 IPR003439 GO:0005524
Tsu02g05617 1077 Gene3D - 826 1074 IPR027417 -
Tsu02g05617 1077 Gene3D ABC transporter type 1, transmembrane domain 485 825 IPR036640 GO:0005524|GO:0016021
Tsu02g05617 1077 Gene3D ABC transporter type 1, transmembrane domain 1 197 IPR036640 GO:0005524|GO:0016021
Tsu02g05617 1077 PANTHER MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7 1 1057 - -
Tsu02g05617 1077 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1057 - -
Tsu02g05617 1077 CDD ABCC_MRP_domain1 224 427 - -
Tsu02g05617 1077 Pfam ABC transporter 858 1004 IPR003439 GO:0005524
Tsu02g05617 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 833 1064 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05617 Tsu-Chr2 64268656 64278940 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05617 244 473 Calmodulin-binding Proteins AT2G36910 27.888 4.57e-19 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05617 K05674 - gmx:100814181 1852.8