Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05611 ATGGATTATTCATCATCATGGATTAACACTTCCTTGAATCTTAACATTAATCCCCACATGGTTCATCAACAACTTCCTAAAAATGTGGtggaaaacaattttttctcaTTGGAGATGAAGAAGTCTTCTCCAAAAGAAGAGTCAAGTGGTGCTTTGGTAGAGGAGCTGAAACGAGTGAGTGCAGAAAACAAGAAGTTGACAGGAATGTTGACAGAGATGTGTGAGAATTACAACACATTGAGAAACAATTTGATGGATTATATGAGAAAGAATCCTGATAAAGAGTCAAGTCcatcaaagaaaagaaagtctGATGAAATAAGCAGCAGTAACAATAATCTAATGGGAGGAGAAGTAGGAGGAGTTAATGGAAACAACTCTGAGAGCAGTTCAAGTGATGAAGATCAATCATGCAAGAAATCAATGGAATTAGAAACTTGCATTAAGGCAAAAGTTTCAAGAGTTTATTACAAACAAGAATCATCTGATTCAAGCCTTATTGTGAAAGATGGATACCAGTGGAGAAAATATGGACAAAAGGTGACAAGGGATAATCCTTCACCAAGAGCATACTTCAAATGTTCATTTGCTCCTAGCTGCacagtgaagaagaaagtgcAAAGAAGTGTGGAAGATCCATCAGTAGTTGTTGCAACATATGAAGGAGAGCATAATCATCCTCATCCTTCTCAAGTGGATTCAACATCATCAGCCACAAACAATCGTTGTAGGAACCCGATAAGTTCAGCAGTGCCTTCTTCTGCACCAAGCACAGTTACCATTGATTGGACAAAATCTAAGTGCAGCAATGAGTCTTCTTCTAAGAAAATGATGATAAATCATCCTAAAATGGAAGTACCTCAGATTTTGGTGGAACAAATGGCTACTTCATTGACCAAGGATCTTAACTTTAGAGCAGCACTAGCAGCTGCTATATCAGGAAAAATGTtgcatcaaaattaa 963 0.351 MDYSSSWINTSLNLNINPHMVHQQLPKNVVENNFFSLEMKKSSPKEESSGALVEELKRVSAENKKLTGMLTEMCENYNTLRNNLMDYMRKNPDKESSPSKKRKSDEISSSNNNLMGGEVGGVNGNNSESSSSDEDQSCKKSMELETCIKAKVSRVYYKQESSDSSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCTVKKKVQRSVEDPSVVVATYEGEHNHPHPSQVDSTSSATNNRCRNPISSAVPSSAPSTVTIDWTKSKCSNESSSKKMMINHPKMEVPQILVEQMATSLTKDLNFRAALAAAISGKMLHQN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05611 320 MobiDBLite consensus disorder prediction 222 256 - -
Tsu02g05611 320 ProSiteProfiles WRKY domain profile. 163 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu02g05611 320 PANTHER TRANSCRIPTION FACTOR 4 320 - -
Tsu02g05611 320 Pfam WRKY DNA -binding domain 169 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu02g05611 320 SUPERFAMILY WRKY DNA-binding domain 166 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu02g05611 320 Gene3D WRKY domain 153 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu02g05611 320 MobiDBLite consensus disorder prediction 88 107 - -
Tsu02g05611 320 MobiDBLite consensus disorder prediction 108 132 - -
Tsu02g05611 320 MobiDBLite consensus disorder prediction 229 256 - -
Tsu02g05611 320 Coils Coil 70 90 - -
Tsu02g05611 320 MobiDBLite consensus disorder prediction 88 138 - -
Tsu02g05611 320 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 4 320 IPR044810 GO:0003700
Tsu02g05611 320 SMART WRKY_cls 168 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05611 Tsu-Chr2 64246725 64248753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05611 1 320 WRKY Transcription Factor Family AT1G80840 52.553 5.35e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu02g05611 WRKY 3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05611 - - gmx:100798375 386.726