Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05608 atggatcgcaacaacaacaacaaaaagaggAACATTTTGTTCAACAAATACGAGATAGGTAAGATTTTAGGACAGGGCAATTTCGCCAAAGTGTATCATGGTAGAGACATGAACACAAATGAAAGCGTAGCTATAAAAgtgattaaaaaagaaaagctgAAAAAAGAGAGGCTGATGAAACAAATCAAACGTGAAGTTTCCGTGATGCGTCTCGTTCGTCATCCACATATTGTTGAATTGAAAGAAGTAATGGCAAACAAAGCTAAAGTTTTCATGGTTGTTGAATATGTGAAAGGAGGTGAACTCTTTGCTAAAGTAGCTAAAGGTAAATTGGAAGAACATGTTGCTAGAAAATATTTTCAACAATTAATCAGTGCTGTTGATTTTTGTCATAGCCGTGGTGTTACACACCGTGATCTCAAACCTGAGAATCTTCTTTTAGATGAAAATGAAGATCTTAAGGTTAGTGATTTTGGTTTATCTGCTTTGCCGGATCAACGAAGATCCGACGGTATGCTTCTCACACCGTGTGGGACTCCGGCCTACGTTGCGCCGGAGGTTTTGAAAAAGATTGGCTATGATGGTTCTAAAGCTGATATTTGGTCTTGTGGTGTTATTCTCTTTGCTTTGCTTTGTGGTTATTTACCTTTTCAAGGTGAAAATGTTATGAGGATTTATAGCAAATCTTTTAAAGCTGATTATGCTTTACCTGAATGGATCTCACCTGGAGCTAAGAAATTGATATCTAATTTGCTTTGTGTTGATCCTGAAAAGAGATTTTCTATAGCTGATATTATGAAAGATCCTTGGTTTCAAATCGGGTTTATGAGACCTATTGCTTTTTCAATGAAAGAATCTGCTGTGGATGATAATATTGATTTCAGTGGAGATGAAGGAAACAACAATGGCAGTGATGGAAATGTGGAAGCTGTGGATGGAATTGTAGTACCAAAAAAGGGTACTCATTCCCGTCGTCCGTCTTACAATGCATTCGAGATCATTTCATCGCTGTCTCACGGATTTGATTTGAGGAACTTGTTCGAAACAAGGAAGAGATCGCCCTCTATGTTTATATCGAAAAATTCTGCATCGGCGGTGGTAGAGAAGATGGAGGATGTGGCAAAGGATCTGAATTTGAAAGTAACGGGGAAGAAAGATTTCATGGTGAAAATGCAGGGGGCAACGGAGGGGAGGAAAGGGAAATTGGGTATGACGGTGGAGGTGTTTGAGGTGGCACCTGAGGTGGCTGTGGTTGAGTTTTCTAAGTCTGCAGGAGATACACTTGAGTATGTTAAGTTCTGTGAAGAAGAAGTTAGACCTTCTCTCAAAGACATTGTCTGGAGCTGGCAGGGTGATACTACTCACTAA 1368 0.3816 MDRNNNNKKRNILFNKYEIGKILGQGNFAKVYHGRDMNTNESVAIKVIKKEKLKKERLMKQIKREVSVMRLVRHPHIVELKEVMANKAKVFMVVEYVKGGELFAKVAKGKLEEHVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLLTPCGTPAYVAPEVLKKIGYDGSKADIWSCGVILFALLCGYLPFQGENVMRIYSKSFKADYALPEWISPGAKKLISNLLCVDPEKRFSIADIMKDPWFQIGFMRPIAFSMKESAVDDNIDFSGDEGNNNGSDGNVEAVDGIVVPKKGTHSRRPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKNSASAVVEKMEDVAKDLNLKVTGKKDFMVKMQGATEGRKGKLGMTVEVFEVAPEVAVVEFSKSAGDTLEYVKFCEEEVRPSLKDIVWSWQGDTTH 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05608 455 Gene3D Kinase associated domain 1, KA1 324 448 - -
Tsu02g05608 455 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05608 455 CDD CIPK_C 329 443 - -
Tsu02g05608 455 Pfam NAF domain 327 382 IPR004041 GO:0007165
Tsu02g05608 455 Coils Coil 45 65 - -
Tsu02g05608 455 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05608 455 PANTHER CBL-INTERACTING PROTEIN KINASE 16 8 454 - -
Tsu02g05608 455 SUPERFAMILY Protein kinase-like (PK-like) 13 272 IPR011009 -
Tsu02g05608 455 Gene3D Transferase(Phosphotransferase) domain 1 7 312 - -
Tsu02g05608 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Tsu02g05608 455 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05608 455 ProSiteProfiles NAF domain profile. 323 348 IPR018451 GO:0007165
Tsu02g05608 455 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Tsu02g05608 455 PANTHER - 8 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05608 Tsu-Chr2 64226610 64227977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05608 8 455 CBL-interacting serine-threonine protein kinases AT5G10930 59.911 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Tsu02g05608 Pkinase 2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05608 - - gmx:100797846 707.983