Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05607 ATGGCTGTCTCAGGTTCTTCTGGTTCTGGGCAGCCACAATTCATTTCAAGCACTGGAAATCAAAACTTTTCCAATGCACCGCTCATTGACAGTGACACAAATACTGATCAAATTGTTGTTCCTGATAGGACAAGCTGGAAAAACTTATTTGCATATATGGGGCCTGGATTTCTTGTTTCCATTGCATATATAGACCCAGGAAACTTTGAGACGGATCTACAATCTGGGGCACAATTTAGATATGAGTTACTTTGGATCATATTGGTGGCATCTTGTGCTGCTCTTGTAATTCAATCGATGGCAGCCAATCTTGGGGTGGTCACCGGAAAGCACTTAGCAGAGCATTGTAGAGCTGAATATTCGCGGGTGTCCAACTTTATTCTTTGGTTTATTGCTGAAATTGCCATAGTGGCCTGTGACATCCCAGAAGTGATCGGGACAGCCTTTGCATTAAATATGCTCTTCAACATACCTGTTTGGATTGGTGTGCTACTGACCGGACTCAGCACATTGATGCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTCTTGTATTCACTATTGCTGCGTGTTTTTGGGCTGAGCTTGGATATGCAAAGCCTGATGCTAAAGAAGTTGTGAAGGGTCTTTTTGTGCCACAACTAAAAGGGAGTGGTGCTGCTGGCCTTGCAATTTCACTCCTCGGTGCTATGGTTATGCCGCACAATCTCTTCCTGCACTCGGCACTGGTACTCTCTAGGAAAATACCACGATCAGTTCGTGGGATCACAGAGGCTTGCAGATTTTACATGATAGAAAGTGCATTTGCTCTTATGGTGGCTTTCCTCATTAATGTTTCTGTCATTTCTGTAAGTGGTGCTGTTTGCAATTCTTCAAATTTGAATGAAGAAGATCAGATGAGCTGTCAGAATTTAGATCTCAACAAAGCTTCCTTCCTACTTAGAAATGTCTTGGGGAAATGGAGTTCAAAACTGTTTGGAGTTGCTTTGCTTGCATCAGGTCAAAGTTCTACGATAACAGGAACCTATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTACGATTGACGCCATGGATTCGGAATATGTTAACTCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTTGCGGTCATTGGTGGCTCTGCTGGGGCTGGGAAGCTCATTATAATCGCATCTATGATCTTATCATTTGAGCTTCCCTTTGCTTTGGTACCACTCCTCAAGTTCACTAGTAGCAAAACCAAGATGGGGGCACATGTTAACTCTACCACgATATCCGCCATTACTTGGATAATCGGTTCACTTATTATGGTTATTAATATATACTACTTAATGAATGGTTTCATCAAGCTTCTTCATAGTGATATAGAAATTGTAGCAAAGGTGTTTCTTGGGATTTTAGGATTTTCAGGCATGGCGGTATATTTGGCCGGTATAGCTTATCTTGTACTCCGCAAAAATAAAGAGGGTACACATCTTTTGGCTCTAACAGCACCTGAAAATCAGCAAATGGCAAATGAACAAGTAAATGGGTCAATTCCAAGAGAAGACATAGTAAACATGCAATTGCCACAGAGAAGTAGTCCTGCAGATCTTGACtga 1629 0.4168 MAVSGSSGSGQPQFISSTGNQNFSNAPLIDSDTNTDQIVVPDRTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQFRYELLWIILVASCAALVIQSMAANLGVVTGKHLAEHCRAEYSRVSNFILWFIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLMLLALQQYGVRKLEFLIAFLVFTIAACFWAELGYAKPDAKEVVKGLFVPQLKGSGAAGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGITEACRFYMIESAFALMVAFLINVSVISVSGAVCNSSNLNEEDQMSCQNLDLNKASFLLRNVLGKWSSKLFGVALLASGQSSTITGTYAGQYVMQGFLDLRLTPWIRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALVPLLKFTSSKTKMGAHVNSTTISAITWIIGSLIMVINIYYLMNGFIKLLHSDIEIVAKVFLGILGFSGMAVYLAGIAYLVLRKNKEGTHLLALTAPENQQMANEQVNGSIPREDIVNMQLPQRSSPADLD 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05607 542 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 11 542 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu02g05607 542 Hamap Divalent metal cation transporter MntH [mntH]. 41 457 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu02g05607 542 Pfam Natural resistance-associated macrophage protein 69 431 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu02g05607 542 PRINTS Natural resistance-associated macrophage protein signature 231 254 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu02g05607 542 PRINTS Natural resistance-associated macrophage protein signature 401 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu02g05607 542 PRINTS Natural resistance-associated macrophage protein signature 156 175 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu02g05607 542 PRINTS Natural resistance-associated macrophage protein signature 181 202 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu02g05607 542 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu02g05607 542 PRINTS Natural resistance-associated macrophage protein signature 128 154 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu02g05607 542 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu02g05607 542 PANTHER METAL TRANSPORTER NRAMP1 11 542 - -
Tsu02g05607 542 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 48 425 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05607 Tsu-Chr2 64213075 64218112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05607 16 535 Inorganic Solute Cotransporters AT1G15960 79.159 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05607 K21398 - gmx:100797298 917.531