Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05605 ATGGAGCATATTAATAATGAGGAAATTCCATCAGCACCAGCAACACCAGGCACTCCTGGTGCACCTCTGTTTGGTGGGTTTAAGTCAGAGAGAAGTGGGAATGGTAGTAATAAGTACAAGAAGTCCCTCCTTAAGAATTGTAAATGTTTCGGAGTCCAAGAATGGACCTTAGAAGATGGAGCTCTACCCACCGTCACTTGTTCATTAATGCCACCCCCTCCTCCTGTTCCTCTCGCAAAAAAGATAGGAGCTGAGTTTATAGGGACATTTATTCTGATGTTTGCTGGGACAGCCGCTGCTATTGTGAACCAAAAGACAAACGGGGCGGAAACTCTGATTGGATGTGCTACCTCGACTGGTCTTGCTGTTATGATCATCATCCTCTCCACTGGCCACATCTCCGGTGCTCATCTCAACCCTGCAGTCACCATTTCCTTTGCTGCATTAAAGCACTTCCCGTGGAAGCATGTGCCTATGTATATTGGTGCACAAGTTTTGGCATCAATATGTGCTGCATATGCTCTCAAAGGGGTTTTTCACCCTTTCATGAGTGGCGGAGTCACTGTTCCTTCCGGAGGATATGGTCAAGCTTTTGCTTTAGAGTTCATTATCAGTTTTAATCTCATGTTCGTTGTCACTGCAGTGGCCACCGATACAAGAGCTGTAGGAGAACTAGCAGGAATTGCAGTGGGAGCAACTGTGATGCTCAATATACTGATAGCAGGGCCAATAACAGGAGCGTCAATGAACCCAGTAAGAACTCTAGGCCCAGCTATTGCTGCCAACAACTACAAAGCCATATGGGTCTATCTATTAGCTCCAATACTCGGAGCTCTAGGCGGGGCAGGTACTTATACAGCAGTCAAACTGACCGAAGAAGATGATAACGCAAAGACTAATGCTTCTTCAAACCACCCCAGCTtcagaagatga 933 0.4577 MEHINNEEIPSAPATPGTPGAPLFGGFKSERSGNGSNKYKKSLLKNCKCFGVQEWTLEDGALPTVTCSLMPPPPPVPLAKKIGAEFIGTFILMFAGTAAAIVNQKTNGAETLIGCATSTGLAVMIIILSTGHISGAHLNPAVTISFAALKHFPWKHVPMYIGAQVLASICAAYALKGVFHPFMSGGVTVPSGGYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPITGASMNPVRTLGPAIAANNYKAIWVYLLAPILGALGGAGTYTAVKLTEEDDNAKTNASSNHPSFRR 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05605 310 CDD MIP 80 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05605 310 PRINTS Major intrinsic protein family signature 80 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05605 310 PRINTS Major intrinsic protein family signature 119 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05605 310 PRINTS Major intrinsic protein family signature 156 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05605 310 PRINTS Major intrinsic protein family signature 200 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05605 310 PRINTS Major intrinsic protein family signature 231 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05605 310 PRINTS Major intrinsic protein family signature 268 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05605 310 PANTHER BNAA02G36290D PROTEIN 7 300 - -
Tsu02g05605 310 ProSitePatterns MIP family signature. 137 145 IPR022357 -
Tsu02g05605 310 Gene3D Glycerol uptake facilitator protein. 75 303 IPR023271 -
Tsu02g05605 310 MobiDBLite consensus disorder prediction 1 27 - -
Tsu02g05605 310 PANTHER AQUAPORIN NIP2-1 7 300 IPR034294 -
Tsu02g05605 310 Pfam Major intrinsic protein 78 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g05605 310 SUPERFAMILY Aquaporin-like 77 296 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05605 Tsu-Chr2 64195975 64198109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05605 4 310 Major Intrinsic Protein MIP AT1G80760 76.603 1.60e-165 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05605 K09874 - gmx:100815637 483.026