Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05602 ATGGATCTTCTAAGATCAGAGCTATGTTCATCTCATAATTTGAACATCTTATTTTCTGAGAAGAGACAGACAGAAAATGAAGATAAAAAACATCTTCTACTGGATTTAAGTCTACCTAGTAACTATTCTGGTGATGATGAGTCAAAGCAAGAACTCAATCTCATAAACTGTTTTGATACAGAAACATCGATGAACTCGTCCTCGGAATCTAATCATGGTAATGAATTAGAGCCTAGGATTTTCTCATGCAACTACTgtcaaagaaaattttatagttCACAGGCACTTGGTGGACACCAAAATGCACACAAGAGAGAAAGAACTATGGCAAAAAGAGGACACAAAGCTGCGGTTTCGCTAGATTTTGAACACAGGTACTCAAGTATGGCTTCTTTACCTCTGCATGGATCCTATAAcagatcatcatcatcacttggAATTCAGGTGCATTCTTCTATGGTTCACAAACCTTCTTATCAAACACCGTTTTTCGGTTTGTCTCGTTCTCGTGCTCAAAACCAGTGGCAGAAACTGCCTATGTATTCACAACCAACAATTGGAAATCTTGCATCAGAAACTGATGGATCATCTTTGGCTAGTGGTATTCCTACAAGATCAGGTAAGTTTTCTCCAACAAAGGTGCAAGATGGACTAATTGGAGGTTACTGGTTGGGTAATAGCGCTACTGCTACATGTTTAAAGACTAAACAAGAGGAGTTGCAGAAACTTGATTTGTCTCTCAAACTCTAA 750 0.3653 MDLLRSELCSSHNLNILFSEKRQTENEDKKHLLLDLSLPSNYSGDDESKQELNLINCFDTETSMNSSSESNHGNELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTMAKRGHKAAVSLDFEHRYSSMASLPLHGSYNRSSSSLGIQVHSSMVHKPSYQTPFFGLSRSRAQNQWQKLPMYSQPTIGNLASETDGSSLASGIPTRSGKFSPTKVQDGLIGGYWLGNSATATCLKTKQEELQKLDLSLKL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05602 249 SUPERFAMILY beta-beta-alpha zinc fingers 78 109 IPR036236 -
Tsu02g05602 249 Gene3D Classic Zinc Finger 57 134 - -
Tsu02g05602 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Tsu02g05602 249 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Tsu02g05602 249 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 19 249 IPR044246 GO:0009788
Tsu02g05602 249 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 19 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05602 Tsu-Chr2 64184094 64185011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05602 13 249 C2H2 Transcription Factor Family AT5G10970 39.442 2.11e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g05602 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05602 - - gmx:100812573 277.33