Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05601 ATGACGAGCCTCGAGGATATCAAGAAGGAGGCTGTGGACCTCGAGAGGATACCCGTCGATGAAGTGTTTCGCGAATTGAATTGTACCAAAGAAGGTCTCACTAATGAGGAAGGCCAAAAAAGGTTGGCAGTTTTTGGCCCAAACAAATTGGAAGAGAAGTCAGAAAACAAGCTGCTTAAGTTCTTGGGCTTTATGTGGAATCCTCTTTCATGGGTCATGGAAGCTGCTGCTATCATGGCTATTGCATTGGCTAATGGAGGGGGTGAGCCACCGGATTGGCAAGATTTCGTGGGAATTACAGTATTGCTGGTCATTAACTCGACCATTAGTTTTATCGAAGAAAACAATGCTGGAAATGCTGCTGCCGCACTTATGGCAGGACTTGCTCCAAAAACCAAAGTTCTGAGAGATGGAAGGTGGAGTGAGCAGGAGGCTTCTATATTGGTACCAGGAGACATAATCAGCATCAAATTAGGAGACATCGTCCCAGCTGATTCTCGTCTTTTGGAAGGAGATTCTCTTAAGATTGATCAATCTGCACTCACTGGTGAGTCCTTGCCTGTTACCAAGAACTCTGGTGATGAAGTCTTCTCCGGTTCCACTGTAAAGCAAGGAGAGCTCGAGGCCATTGTAATTGCTACTGGTGTCCACACCTTCTTCGGTAAGGCTGCTCATTTGGTCGACAGTACTAACCAAGTTGGTCATTTCCAACAGGTGTTGACAGCAATCGGTAACTTCTGCATTTGCTCAATTGCTTTGGGAATGATCATCGAGATTGTTGTCATGTATCCAATTCAGCACCGCCAGTACAGAAGTGGGATTGACAATCTCTTGGTCCTTCTCATCGGAGGAATCCCAATTGCCATGCCAACAGTTTTGTCAGTTACCATGGCTATTGGTTCACATAGGTTGTCTGAGCAAGGTGCTATCACAAAGAGGATGACAGCCATTGAAGAAATGGCTGGAATGGATGTTTTATGCAGTGACAAGACTGGAACTCTAACACTTAACAAACTTACTGTAGACAAGAATCTGATTGAGGTATTTGCAAGAGATACCGACAAGGACATGGTAATTTTGCTTGGAGCAAGAGCCTCTAGGGTAGAGAACCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTGAGTGATCCTAAAGAGGCTAGAGATGGGTGTACAGAGGTGCATTTCCTCCCCTTTAATCCTGTCGACAAGCGTACCGCCATGACATACATAGACACCGAGGGTAATTGGCACCGAGTAAGCAAAGGTGCACCGGAGCAGATTATTGAACTTTGCAATCTTAGAGAAGATGTGAAGAAGAAAGCTCTTTCCATTATTGATAAATTCGCTGACCGCGGTCTTCGTTCCCTTGCTGTTTCCAAACAACAGGAGGCTTCTATATTGGTACCAGGAGACATAATCAGCATCAAATTAGGAGATATCGTCCCAGCTGATGCTCGTCTTTTGGAAGGAGATTCTCTTAAGATTGATCAATCTGCACTCACTGGTGAGTCCTTGCCTGTTACCAAGAACTCTGGTGACGAAGTCTTCTCCGGTTCCACTGTAAAGCAAGGAGAGCTCGAGGCCATTGTAATTGCTACTGGTGTCCACACCTTCTTCGGTAAGGCTGCTCATTTGGTCGACAGTACTAACCAAAAGGCTGATGGATTTGCTGGTGTCTTCCCTGAACATAAATATGAGATTGTAAAGAGACTCCAGGACAGGAAACACATATGTGGAATGACAGGAGATGGTGTGAATGATGCACCTGCATTGAAAAGAGCAGACATTGGAATTGCAGTGGCTGATGCAACTGATGCAGCTCGAGGTGCATCCGATATAGTCCTCACGGAGCCTGGTTTGAGTGTTATCGTCAGTGCAGTCCTCACGAGCAGAGCTATTTTCCAAAGAATGAAGAACTACACAATTTACGCAGTTTCCATAACGATTCGAGTTGTCTTTGGCTTTATGCTCCTTGCTCTAATTTGGAAATTTGACTTCTCTCCTTTTATGGTTTTGATCATTGCCATACTTAATGACGGCACAATCATGACCATTTCAAAGGATAGGGTGAAGCCATCACCTATGCCAGATTCATGGAAGTTAAAAGAGATTTTCGCCACAGGCATAGTGCTCGGTGCCTACCAAGCTGTTATGACTGTTGTCTTCTTTTGGGCTGCTCATGCATCTAATTTCTTCTCGgacAAATTTGGAGTTAGATCTATCAAAGAAAATCATGATGAGCTCACAGCTGCAGTTTACCTTCAAGTGAGTATTATTAGTCAGGCTCTCATCTTTGTGACACGCTCAAGGAGCTGGTCTTTCGTTGAACGTCCTGGCTTCTTGCTTCTGTTTGCCTTTCTCGTAGCACAACTGATCGCCACATTGATAGCTGTGTATGCAAATATGGCATTTGCAAGTATGAAAGGAATTGGATGGGGTTGGGCAGGTGTCATTTGGCTCTACAGCATTATTACCTACTTCCCATTGGATATCCTTAAGTTCTTCATCCGATATGCCTTGAGCGGCAAGGCATGGAATAATATTACTGACAATAGGACTGCCTTCACAACAAAGAAGGATTACGGAAGGGGTGAGAGAGAAGCACAATGGGCTACAGCTCAACGCACACTACACGGTTTGAATCCACCAGAAACCGAACAAGTTTTGGGTGAAGCTGACGGCTATAGAGAATTATCTGAACTTGCAGAACAAGCCAAGAAGCGTGCCGAAATTGCAAGGTTAAGGGAGCTTCACACACTAAAGGGTCATGTGGAATCTGTTGTAAAGCTCAAGGGACTTGACATTGAGACAATTCAGCAAAACTACACTGTTTAA 2841 0.4446 MTSLEDIKKEAVDLERIPVDEVFRELNCTKEGLTNEEGQKRLAVFGPNKLEEKSENKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGEPPDWQDFVGITVLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEASILVPGDIISIKLGDIVPADSRLLEGDSLKIDQSALTGESLPVTKNSGDEVFSGSTVKQGELEAIVIATGVHTFFGKAAHLVDSTNQVGHFQQVLTAIGNFCICSIALGMIIEIVVMYPIQHRQYRSGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFARDTDKDMVILLGARASRVENQDAIDACIVGMLSDPKEARDGCTEVHFLPFNPVDKRTAMTYIDTEGNWHRVSKGAPEQIIELCNLREDVKKKALSIIDKFADRGLRSLAVSKQQEASILVPGDIISIKLGDIVPADARLLEGDSLKIDQSALTGESLPVTKNSGDEVFSGSTVKQGELEAIVIATGVHTFFGKAAHLVDSTNQKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRVVFGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGIVLGAYQAVMTVVFFWAAHASNFFSDKFGVRSIKENHDELTAAVYLQVSIISQALIFVTRSRSWSFVERPGFLLLFAFLVAQLIATLIAVYANMAFASMKGIGWGWAGVIWLYSIITYFPLDILKFFIRYALSGKAWNNITDNRTAFTTKKDYGRGEREAQWATAQRTLHGLNPPETEQVLGEADGYRELSELAEQAKKRAEIARLRELHTLKGHVESVVKLKGLDIETIQQNYTV 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05601 946 ProSitePatterns E1-E2 ATPases phosphorylation site. 329 335 IPR018303 -
Tsu02g05601 946 PANTHER PLASMA MEMBRANE ATPASE 553 926 - -
Tsu02g05601 946 PRINTS H+-transporting ATPase (proton pump) signature 583 599 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu02g05601 946 PRINTS H+-transporting ATPase (proton pump) signature 614 639 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu02g05601 946 PRINTS H+-transporting ATPase (proton pump) signature 755 776 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu02g05601 946 PRINTS H+-transporting ATPase (proton pump) signature 555 571 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu02g05601 946 PRINTS H+-transporting ATPase (proton pump) signature 443 461 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu02g05601 946 Gene3D - 516 841 - -
Tsu02g05601 946 Gene3D - 64 144 - -
Tsu02g05601 946 SUPERFAMILY Calcium ATPase, transduction domain A 130 227 IPR008250 -
Tsu02g05601 946 SFLD p-type atpase 309 635 IPR044492 -
Tsu02g05601 946 PANTHER CALCIUM-TRANSPORTING ATPASE 553 926 - -
Tsu02g05601 946 PANTHER CALCIUM-TRANSPORTING ATPASE 3 463 - -
Tsu02g05601 946 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 558 667 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu02g05601 946 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 99 348 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu02g05601 946 SFLD C1.7: P-type atpase like 309 635 - -
Tsu02g05601 946 SUPERFAMILY HAD-like 323 630 IPR036412 -
Tsu02g05601 946 SMART Cation_ATPase_N_a_2 13 85 IPR004014 -
Tsu02g05601 946 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 842 IPR023298 -
Tsu02g05601 946 PRINTS P-type cation-transporting ATPase superfamily signature 177 191 - -
Tsu02g05601 946 PRINTS P-type cation-transporting ATPase superfamily signature 327 341 - -
Tsu02g05601 946 PRINTS P-type cation-transporting ATPase superfamily signature 606 618 - -
Tsu02g05601 946 PRINTS P-type cation-transporting ATPase superfamily signature 583 602 - -
Tsu02g05601 946 Gene3D - 180 341 - -
Tsu02g05601 946 Pfam haloacid dehalogenase-like hydrolase 323 597 - -
Tsu02g05601 946 Pfam E1-E2 ATPase 464 554 - -
Tsu02g05601 946 Pfam E1-E2 ATPase 129 306 - -
Tsu02g05601 946 Gene3D - 896 946 - -
Tsu02g05601 946 Gene3D - 342 484 IPR023299 GO:0000166
Tsu02g05601 946 Pfam Cation transporter/ATPase, N-terminus 17 79 IPR004014 -
Tsu02g05601 946 PANTHER PLASMA MEMBRANE ATPASE 463 553 - -
Tsu02g05601 946 PANTHER PLASMA MEMBRANE ATPASE 3 463 - -
Tsu02g05601 946 PANTHER CALCIUM-TRANSPORTING ATPASE 463 553 - -
Tsu02g05601 946 Coils Coil 897 917 - -
Tsu02g05601 946 CDD P-type_ATPase_H 32 836 IPR006534 GO:0008553|GO:0016021|GO:0120029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05601 Tsu-Chr2 64166019 64178115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05601 3 946 Primary Pumps ATPases AT2G07560 76.205 0.0 1441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05601 K01535 - gmx:100796240 1489.17