Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05598 atgaatcttgTTTTTCTGTTCATTCCCATTTCTCTTTTCTCAACAATTCTTCATGCAAATGCACAAGCTCAATCTCCAGGAAATCAGGAGGTTAGAGTAGTGCATCATCAGAGTTTGAACAAGAGAATTCTAATAGCACTAATTGcttgttcttctcttcttgtTGGAATCTTCCTGTTCTTATTGTATTTCTTCTTCCGTCGACATAAAAACTTGAAAAGTTCCACTAGTAAAAGCCAAGGAACCATAGAGGCTGCAAAAGGGGAAAAGGAAACCTTAAGCTCCGTTAGTGCTAAATTTAACTACTCAAGAATGGCTGATAAGAAGAGTTCAATTGCTATTTTCGACTTTCAGTTGTTAGAGACTGCCACAAATAACTTTTCCACGGATAATATTATGGGAGAGAGTGGTTCTAGAATTGTATATAGAGCTCGTTTTGATGAACATTTCCAGGCTGCTGTCAAGAAAGCAGACAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTTGTTGAGCAAGATTCGGCATCAGAATATCATAAAACTCCTAGGCTATTGTATTCATGGTGAATCAAGGTTTCTTGTTTATGAGTTCATGGAGAGTGGTTCTTTGGAAACTCAATTGCATGGGCCTACTCGCGGATCGTCTTTAACTTGGTATATTCGGTTAAGAATTGCAATTGATGTTGCTAGAGCATTAGAATATCTCCATGAGCATTCCAATCCTCCTGTTGTTCATCGAGACTTAAAATCTTCCAATGTTCTTCTGGATTCTAATTTTAATGCTAAGCTATCAGATTTTGGACTTGCTGTAGCTTCTGGTATGCAACACAAGAACATGAAGATGTCGGGAACATTGGGATATGTGGCACCCGAGTACATATCACATGGTAAACTAACCGATAAGAGCGATGTTTATGCTTTTGGAGTTGTCCTTCTAGAACTTCTTACGGGAAGAAAACCAATGGAGAACATGTCCTCGGACCAATACCAATCTCTAGTTTCATGGGCCATGCCTCAACTAACTGACAGATCAAAGCTTCCAAGTATTCTAGATCCTGTTATCCAAAACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTGCTATGTGTGCAAGCAGAACCAAGTTATAGACCACTTATAACAGATGTTCTGCACTCTCTCATTCCTTTGGTACCCTTAGAGCTTGGAGGGTCACTCAGAGTTACAGAACCAATCAGCTCGGAAAAttgtaattga 1254 0.382 MNLVFLFIPISLFSTILHANAQAQSPGNQEVRVVHHQSLNKRILIALIACSSLLVGIFLFLLYFFFRRHKNLKSSTSKSQGTIEAAKGEKETLSSVSAKFNYSRMADKKSSIAIFDFQLLETATNNFSTDNIMGESGSRIVYRARFDEHFQAAVKKADSDADREFENEVSLLSKIRHQNIIKLLGYCIHGESRFLVYEFMESGSLETQLHGPTRGSSLTWYIRLRIAIDVARALEYLHEHSNPPVVHRDLKSSNVLLDSNFNAKLSDFGLAVASGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMENMSSDQYQSLVSWAMPQLTDRSKLPSILDPVIQNTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPLELGGSLRVTEPISSENCN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05598 417 PANTHER RECEPTOR-LIKE KINASE 18 408 - -
Tsu02g05598 417 Gene3D Phosphorylase Kinase; domain 1 86 199 - -
Tsu02g05598 417 CDD STKc_IRAK 133 396 - -
Tsu02g05598 417 Pfam Protein tyrosine and serine/threonine kinase 141 360 IPR001245 GO:0004672|GO:0006468
Tsu02g05598 417 ProSiteProfiles Protein kinase domain profile. 127 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05598 417 Gene3D Transferase(Phosphotransferase) domain 1 200 398 - -
Tsu02g05598 417 SMART serkin_6 127 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05598 417 SUPERFAMILY Protein kinase-like (PK-like) 103 393 IPR011009 -
Tsu02g05598 417 PANTHER OS01G0253100 PROTEIN 18 408 IPR045271 GO:0004714|GO:0006468
Tsu02g05598 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05598 Tsu-Chr2 64158622 64162378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05598 8 339 Receptor kinase-like Gene Family AT1G80640 48.071 2.93e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Tsu02g05598 PK_Tyr_Ser-Thr 3.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05598 - - gmx:100811188 668.307