Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05593 ATGGAGCAGTCATGGGAGGATATATGGCATCTTCATACGGAAATGGATATTGAAAATTGGTTGGAGATGTGCCAACAAGAAGAAGACTACCTTGGTGACTACATGGTACATCAATCGTCTTTCGAAGCCCCAGCCGTGATCGAGACTACCACGGAgaatacactacaagaaatttgccATATACCAACGGTAGTTTCCAGTGAGATGATTGTATGCTCTGAGATGTCACCGAAGCTACTTCATCTGTCCACATCCGCTAAAACTTGCATTAGTGCCTCTTTTGATAACTCCGCCATAATACCCTTAAAACCATCTGTGACATCTTCCAAGCCACCGCTTCCGCCATGTTCAGCAAAAAAGAGGACTTCTGAGAAACTAAAGAGCTCCGAAGCAAAAGCAATTACAAAAGAAGGAGAAAATAAGATTATCGGAAGCAGATCTAAGACTCTACACACAATGGTAGAGAGGCAAAGGAGACTTGAACTGGCACACAAGTTCATAGAGCTTTCAGCTACAATTCCTCACTCGAAGAAGACAGACAAGGCTTCTATAGTTATGGGAACTATCAATCACGTGAAACAACTCCAAAAACGAGTGAAGGAGTTAGAACAACAAAACAAGAGAGGCAAAGAACCTATGATCATACTCCACAATGAATTGCTCCCTTATGTCAAAGCAAAAGTGTTGGACAAAAATATACTCTTTTACATCACTTGTGAGAAACAAAATGGCATTGAACTCAAAATATTAGAAATGCTTGAAAATCTTCATTTGTTAATCACCGGTACCAGCATATTGCCGTTTGGTGGTTCAACTCTTGGCATTACTATCATTGCCAAGATGGACGACGCATTCAAAATGAGGGTGGTCGATCTGGTGGATAATGTAAGGCAATTGTTGATGAGTAGTTCTCCAAATCCTCGAACATGA 930 0.4011 MEQSWEDIWHLHTEMDIENWLEMCQQEEDYLGDYMVHQSSFEAPAVIETTTENTLQEICHIPTVVSSEMIVCSEMSPKLLHLSTSAKTCISASFDNSAIIPLKPSVTSSKPPLPPCSAKKRTSEKLKSSEAKAITKEGENKIIGSRSKTLHTMVERQRRLELAHKFIELSATIPHSKKTDKASIVMGTINHVKQLQKRVKELEQQNKRGKEPMIILHNELLPYVKAKVLDKNILFYITCEKQNGIELKILEMLENLHLLITGTSILPFGGSTLGITIIAKMDDAFKMRVVDLVDNVRQLLMSSSPNPRT 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05593 309 Coils Coil 185 212 - -
Tsu02g05593 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Tsu02g05593 309 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 303 - -
Tsu02g05593 309 Pfam Helix-loop-helix DNA-binding domain 148 196 IPR011598 GO:0046983
Tsu02g05593 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 217 IPR036638 GO:0046983
Tsu02g05593 309 PANTHER BHLH TRANSCRIPTION FACTOR 1 303 - -
Tsu02g05593 309 SMART finulus 152 201 IPR011598 GO:0046983
Tsu02g05593 309 MobiDBLite consensus disorder prediction 105 131 - -
Tsu02g05593 309 Gene3D - 144 214 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05593 Tsu-Chr2 64132879 64136036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05593 151 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.306 5.87e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g05593 HLH 6.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05593 - - mtr:MTR_2g104530 248.825