Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05592 ATGGAGCTGCCATGGGAGAATAATTGGCCTCTTCATACGgaAATAGCACAACAATCATCTTTAGTAGGCGGAGCTGCCGCCACCAATGAGTTGTCGCCGCCACCGTTGCCGCGGGAGCTGCTTCCTCCGTCCTCTAGTAATTGCATGACACTACCATTTATACCAGCTGCTGCTATGTCCAAACCACCAATTTGTTATAGAAAAAAGAGAAGTTCTGAGAATCTAAATAGCTTAAaagcaaaaagagaaaagaagattATAAGAAGTGGATCTGAGATTGAACATCACACAATGTTAGAGAGGAAAAGGAGACGTAGACTTGCTCACCAATTCATAGAGCTTTCAGCTACTATTCCTGGCTTAAAGAAGATAgacaaaatttctataattATAGGAGCTATCAATCACGTGGAACAACTTCAAAAACGAGTGATGGAGTTAGAACATGAAAACAAGAGAGGCAAAGAACCTAATATACTCCTCAATATGGCAAGTGATCCAAATCTTGACAATTGTCTTGGACCCGATGAATTATTGCTTCCTCATGTCAAAGCAAAAGTGATGGAAAATAATATACTCATTTACATCAATTGTGAGAAGGAAAATGGCATTGTACTCAAAATATTAAACATGCTTCGAAATCTTCATTTGTTAGTCACAAGCACCACCGTATTGCCTTTTGGTAATTCAACTCTTCGCATTACTATCATTGCCGAGATGGATGATGCATACAAAATGAAGATGATGGATCTAGTGGATAACGTAAGGCAATTGCTGTCAAATGATGGTTCTACAAATCGTTGA 804 0.3769 MELPWENNWPLHTEIAQQSSLVGGAAATNELSPPPLPRELLPPSSSNCMTLPFIPAAAMSKPPICYRKKRSSENLNSLKAKREKKIIRSGSEIEHHTMLERKRRRRLAHQFIELSATIPGLKKIDKISIIIGAINHVEQLQKRVMELEHENKRGKEPNILLNMASDPNLDNCLGPDELLLPHVKAKVMENNILIYINCEKENGIVLKILNMLRNLHLLVTSTTVLPFGNSTLRITIIAEMDDAYKMKMMDLVDNVRQLLSNDGSTNR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05592 267 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 53 262 - -
Tsu02g05592 267 Pfam Helix-loop-helix DNA-binding domain 95 141 IPR011598 GO:0046983
Tsu02g05592 267 Coils Coil 130 150 - -
Tsu02g05592 267 Gene3D - 87 158 IPR036638 GO:0046983
Tsu02g05592 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 140 IPR011598 GO:0046983
Tsu02g05592 267 PANTHER BHLH TRANSCRIPTION FACTOR 53 262 - -
Tsu02g05592 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 161 IPR036638 GO:0046983
Tsu02g05592 267 SMART finulus 97 146 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05592 Tsu-Chr2 64124597 64127899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05592 70 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.811 1.39e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g05592 HLH 8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05592 - - mtr:MTR_2g104530 257.299