Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05591 ATGGACCAATCTTGGGAAAATTGGCCTCTCCATTcgGAATTgggtgatgatgaagaatttttGAGAGACATAATCTTGCAACAACCAGCTACATATTCTGGAAGCAGTTTATCATCTTCTAATGAGATGGACGGTTCAGATTGCTCTGGAAAAAAGGTTCATCATAACCCTTCAACAACGTTGTCAAGTAGTGCTCCTAGgacatttattttgtcttttgataaatcaacaataataCCAGCTACTActaatgaagaagaagaagaagaaccacGAATTAAAAGTAGAAGTGGTGGAAAATCTACTaatattaatagtaataataagaGGAGTTTGGAATTACCAAAAGTGAAAGTGAATAGTAGTGCAAAAAGTGGAAAAAAGAGTAGAAGCGATTCTCAGTGTATGGATCACATTATGGCTGAGAGAAAAAGGAGATTGGAAATAGCACAGAAGTTCATTGCACTTTCAGCTACTATTCCTGGCTTGAAGAagacGGACAAGACCTCTATACTTTGTGAAGCAATTAATTATGTGAAACTACTTCAACAACGTGTGAAAGAGCTAGAGGATCCAAACAAGAATAGCAAAGAATCAACAATAATCCTCAAAAAAACTGATTTGTGTGCAAATGAACATACAACCTCAAATGACACAAATTTTGATCACAAATCACCCCTTGATGTTAAAGCAAGAATTTTGGGAAATGAGGTACTCATTGAGATCCATTGTGAGAAGCAAAATGGCATTGAGCTCAAAATATTGAACCTTCTTGAAAATCTTCATTTGATTGTCTCCGCAAGCAGTGTATTTCCTTTTGGGGATTCAAATCTTGGCATTACTATTGTCGCTCAGGTACGCATTATATTGTGA 873 0.3253 MDQSWENWPLHSELGDDEEFLRDIILQQPATYSGSSLSSSNEMDGSDCSGKKVHHNPSTTLSSSAPRTFILSFDKSTIIPATTNEEEEEEPRIKSRSGGKSTNINSNNKRSLELPKVKVNSSAKSGKKSRSDSQCMDHIMAERKRRLEIAQKFIALSATIPGLKKTDKTSILCEAINYVKLLQQRVKELEDPNKNSKESTIILKKTDLCANEHTTSNDTNFDHKSPLDVKARILGNEVLIEIHCEKQNGIELKILNLLENLHLIVSASSVFPFGDSNLGITIVAQVRIIL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05591 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 195 IPR036638 GO:0046983
Tsu02g05591 290 SMART finulus 139 188 IPR011598 GO:0046983
Tsu02g05591 290 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 286 - -
Tsu02g05591 290 MobiDBLite consensus disorder prediction 97 115 - -
Tsu02g05591 290 Pfam Helix-loop-helix DNA-binding domain 135 183 IPR011598 GO:0046983
Tsu02g05591 290 MobiDBLite consensus disorder prediction 80 135 - -
Tsu02g05591 290 MobiDBLite consensus disorder prediction 81 96 - -
Tsu02g05591 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Tsu02g05591 290 Gene3D - 123 199 IPR036638 GO:0046983
Tsu02g05591 290 PANTHER BHLH TRANSCRIPTION FACTOR 1 286 - -
Tsu02g05591 290 MobiDBLite consensus disorder prediction 31 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05591 Tsu-Chr2 64115931 64120007 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05591 129 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22760 42.515 1.59e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g05591 HLH 7.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05591 - - cam:101501528 265.388