Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05590 ATGTGGAGTTCAACAAGCAAAGTCTCCGAAGAGGAGCAAACTgaatcttcttctttctcaacAACTCTCTTCAATTTCTCTTCTGGAAACCCTAGAATCGAAGAAACTCGCGGCCTCATGCATGTCTTCCCCCACGAATCTCCTCCTTCTCTTCCGATTGAACGGAAGCCATTGGCGTGTGTTGTTGGAGTACCAAATCATATGACGTATGCGgatttttgtcaattttgtggTTCGTTTATTCAGCATATGCTTGAAATGCGTATTGTTAGAATGGATAATATGGAAGATCGTTACAGTGTTTTGATTCGATTCGATGAGCAAAATTCTACTGATGCGTTTTATACTCATTACAATGGTCGACGTTTTTCTTCTCTTGAGGTTGAAGTGTGCCGTGTTGTTTTCACGATAGATGTGCAGTATACTGGCTCTATTGAACATGCACAACCATCCAATGCTACTTCAACTGAACAGCCTACATGTCCAGTTTGCCTTGAGCGATTAGATCAAGACACAAGTGGAATTCTTACAACTATATGCAATCATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAACAGCAAGCTGAAAAATCTATTTGTTTCGTTTGTCAAACCACGGAGAACCTTTGGATATGTGTTATATGTGGGTTTGTTGGCTGTGGAAGATATAAAGGAGGGCATGCCATAATACACTGGAAAGAAACACAGCATTGCTATTCCTTAGAAGTGGAAACCAAGCGCGTTTGGGATTACGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTAGTTGAGCTGAACTCTCACTGTATGCATGCAGACAGTGGATGTGGCAGCTGCGGAGGAGATAATGCCATGAGAGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAGCGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTGTATTTTGAATCCTTATTACAACAAGTAGAACAAGAAACTGAAGGAAAAATTTCTGTAGCTGTTCAGAAGGCTGTCAGTCTCAAACAACAGAAGATTCAGTCCAAGATCGATAGATGTAACAAAGAGAAGAAATTTCTAGATGAGCTTAATGATAATCTTTTGAAAAACGAGGAGATTTGGAAAGCCAAGATACTCGAGATTGAAGAGAGGGAGAAAAAAGCTTTAAAACTGACCGATGATAAGATAACGGGCCTAGAAAAGAAGCTTAGTAACCTCATGATTTGTCTTGAGGGTGGGAATACGGTAGAACAGCTGCCGTTGTCAAATGATACAAATGttttattCGTACGCTCTTTTTTCCTGTGGATGCCGTTCGAACTCTGGacactatttatatatttgaatgCTAACATGGAGGATTGGTGGGAGAATTGGTTCTCTGATTTGGATAAGGACATTAATAAGTCATTCAATAAATGCCAAAGGAATTCTCCCAGATTAGGCCATTGTTCTTCTGATTCAGGGACTGATGCTCCTGCTATACAAGGAACAAAGAGGGTGAGAAGCTCATGGGAGATACAATATCACATAATGTCAGAGAGAAAAAGGAGACATGAAATGGCAGAGAGATTCATAGAACTTTCCTCTATTATACCTGGATTGAAGAAGATAGACAAGGCCTCTGTCCTTGGAGAAGCTATTAATCACGTGAAACAGCTTAAACAACGGATATCAATGCTAGAGCAACAGAGTTATGAGAAGAAAAGTACAAAATCAATAATCTCTATTACAGAATCTCAATCTTATGCAAATGGAAGTAATGGTAATTTGGATTGTAATATTGAAGTGCTCCATGAAGTGGAGGCCATATGCATAGAGTCAGAGAAAGAGCTACTTATCAGAATCCATTGTGAGAAACTTAATGGCATTTTGCTCAAACTATTGGCCTTACTTGAAAGTATGGACCTATCTGTTTCCACTAGCAACATGCTTCCAATTGGAAATAATACCCTCCATATTACCATCATTGCtaagGTTGGGGAAATAGATGTGAAGCTATgtgaatcaacaacaacaagtCTTGAGGGCAAAAAGAAAGTTTCCTGA 2106 0.3803 MWSSTSKVSEEEQTESSSFSTTLFNFSSGNPRIEETRGLMHVFPHESPPSLPIERKPLACVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDNMEDRYSVLIRFDEQNSTDAFYTHYNGRRFSSLEVEVCRVVFTIDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCMHADSGCGSCGGDNAMREAILNSKVEAIVSEYNELLATQLENQKLYFESLLQQVEQETEGKISVAVQKAVSLKQQKIQSKIDRCNKEKKFLDELNDNLLKNEEIWKAKILEIEEREKKALKLTDDKITGLEKKLSNLMICLEGGNTVEQLPLSNDTNVLFVRSFFLWMPFELWTLFIYLNANMEDWWENWFSDLDKDINKSFNKCQRNSPRLGHCSSDSGTDAPAIQGTKRVRSSWEIQYHIMSERKRRHEMAERFIELSSIIPGLKKIDKASVLGEAINHVKQLKQRISMLEQQSYEKKSTKSIISITESQSYANGSNGNLDCNIEVLHEVEAICIESEKELLIRIHCEKLNGILLKLLALLESMDLSVSTSNMLPIGNNTLHITIIAKVGEIDVKLCESTTTSLEGKKKVS 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05590 701 SUPERFAMILY RING/U-box 177 276 - -
Tsu02g05590 701 SMART ring_2 161 200 IPR001841 -
Tsu02g05590 701 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 528 586 IPR036638 GO:0046983
Tsu02g05590 701 SMART Zf_UBP_1 211 260 IPR001607 GO:0008270
Tsu02g05590 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Tsu02g05590 701 SMART finulus 530 579 IPR011598 GO:0046983
Tsu02g05590 701 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 524 573 IPR011598 GO:0046983
Tsu02g05590 701 Pfam BRCA1-associated protein 2 52 148 IPR011422 -
Tsu02g05590 701 CDD RRM_BRAP2_like 60 140 - -
Tsu02g05590 701 MobiDBLite consensus disorder prediction 1 23 - -
Tsu02g05590 701 Pfam Ring finger domain 160 201 IPR001841 -
Tsu02g05590 701 ProSiteProfiles Zinc finger UBP-type profile. 195 288 IPR001607 GO:0008270
Tsu02g05590 701 CDD RING-H2_BRAP2 159 202 - -
Tsu02g05590 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 202 IPR013083 -
Tsu02g05590 701 Coils Coil 369 389 - -
Tsu02g05590 701 PANTHER BRCA1-ASSOCIATED PROTEIN 5 436 - -
Tsu02g05590 701 Pfam Helix-loop-helix DNA-binding domain 529 574 IPR011598 GO:0046983
Tsu02g05590 701 Coils Coil 325 345 - -
Tsu02g05590 701 Coils Coil 563 583 - -
Tsu02g05590 701 Gene3D - 517 589 IPR036638 GO:0046983
Tsu02g05590 701 ProSiteProfiles Zinc finger RING-type profile. 161 201 IPR001841 -
Tsu02g05590 701 Pfam Zn-finger in ubiquitin-hydrolases and other protein 212 271 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05590 Tsu-Chr2 64104176 64112513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05590 521 679 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 38.983 2.61e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g05590 BRAP2 3.6e-37 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05590 K10632 - gmx:100794688 755.362