Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05570 ATGGCAGTTATATCTCTATCTCTTCTACCACCACCACCTTCAACTCATTCTTGTTTCTGTTCAGGAATCAATCTCCGTTCACACAACAATTCTCTTTCCATTCATTCTCCTTCTCCTTTTCCTTCTACTTTCTCTAACTCTAATTCTAAATTCTCTTCTAGAACAAAACAACGCTTTCACACTGTTTTCGCTGCTTCTTCTGATTACTATGCTACTCTTGGAGTTCCCAAATCCGCCACCGTTAAAGAAATCAAAGCCGCTTATCGAAGGTTAGCTCGTCAGTATCATCCTGATGTGAATAAGGAACCTGGAGCAACTGATAAGTTTAAAGAGATTAGTAATGCTTATGAGGTGCTATCAGATGACAAAAAGAGGTCTTTGTATGATCAATACGGCGAGGCAGGAGTTAAGAGTTCAGTGGGAGGAGGATCAAGTGCTTATGCGACGAATccatttgatttatttgagaCCTTTTTTGGGCCAAGTATGGGCGGCTTTGGTGGCATGGATCCAACTGGATTTGGCACGCGGCGTCGTAGTACTGTTACTAAGGGTGAAGACATCCGGTATGATTTCTCCTTGGCGTTTACTGATGCAATTTTCGGAACAGAGAAAGAATTCGATCTTTTCCATTTAGAGACATGTGAAGTCTGTACTGGTACTGGTGCAAAGTTAGGCACCAAGATGAGAGTATGTTCAACTTGTGGTGGCAGGGGCCAAGTGATGAGGACCGAACAAACACCTTTTGGGTTGTTTTCACAGGTTTCAGTATGTCCAAATTGTGGGGGTGATGGTGAAGTCATATCTGAAAGTTGTCGTAAATGCAGCGGTGAAGGACGCATACGCGTTAAGAAGACTATGAAAGTTAAAGTTCCTCCTGGGGTTAGCTCAGGCAGTATTTTAAGAGTTAGCGGAGAAGGTGATGCTGGACCAAGAGGGGGTCCTCCAGGAGATCTTTATGTATATCTTGAGGTGCTTGAGATACCAGGAATTCAAAGAGACGACATTAATCTCCGCTCAACAATTTCAATCAGCTATCTAGAGGCTATACTGGGGTCTGTAGTGCAGGTAAAGACGGTTGAAGGTACTTCTGAACTACAAATCCCCGCTGGTACTCAACCTGGAGATGTCCTCGTCCTTGCAAGGAAGGGTGTACCAAAACTAAACAGACCATCAATACGTGGTGACCACTTATTTACTGTTAAAGTTACAATACCAAAACGTATAAGTCAAAAGGAGCGTGAGGTGCTTGAAGAACTTGCTTCTCTAGGTGACCCAAGCAGTCATTCAAGATCCCGTCCTAGAACCCAATCTTCCGCAGGAAGTAAGGAAAGTCCTGCAGCTGCAGCTCAAATGGCCGAAAGTCCAACAGCAACAGTCACAGAAACACCAGAGAAATCAGAAGACCAAGATGACTTATGGAATAAACTAAAGAGTGTGGCTGGGTCTGTGGCAAATGGAGCTCTAAAGTGGTTTAAAGATAATCTTTAG 1491 0.4313 MAVISLSLLPPPPSTHSCFCSGINLRSHNNSLSIHSPSPFPSTFSNSNSKFSSRTKQRFHTVFAASSDYYATLGVPKSATVKEIKAAYRRLARQYHPDVNKEPGATDKFKEISNAYEVLSDDKKRSLYDQYGEAGVKSSVGGGSSAYATNPFDLFETFFGPSMGGFGGMDPTGFGTRRRSTVTKGEDIRYDFSLAFTDAIFGTEKEFDLFHLETCEVCTGTGAKLGTKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISESCRKCSGEGRIRVKKTMKVKVPPGVSSGSILRVSGEGDAGPRGGPPGDLYVYLEVLEIPGIQRDDINLRSTISISYLEAILGSVVQVKTVEGTSELQIPAGTQPGDVLVLARKGVPKLNRPSIRGDHLFTVKVTIPKRISQKEREVLEELASLGDPSSHSRSRPRTQSSAGSKESPAAAAQMAESPTATVTETPEKSEDQDDLWNKLKSVAGSVANGALKWFKDNL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05570 496 Pfam DnaJ C terminal domain 188 406 IPR002939 -
Tsu02g05570 496 CDD DnaJ 68 121 IPR001623 -
Tsu02g05570 496 SUPERFAMILY HSP40/DnaJ peptide-binding domain 183 333 IPR008971 GO:0006457|GO:0051082
Tsu02g05570 496 MobiDBLite consensus disorder prediction 425 445 - -
Tsu02g05570 496 ProSiteProfiles Zinc finger CR-type profile. 202 284 IPR001305 GO:0031072|GO:0051082
Tsu02g05570 496 Gene3D - 185 321 - -
Tsu02g05570 496 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Tsu02g05570 496 Pfam DnaJ domain 68 129 IPR001623 -
Tsu02g05570 496 Gene3D DnaJ domain 64 169 IPR036869 -
Tsu02g05570 496 PRINTS DnaJ domain signature 88 103 IPR001623 -
Tsu02g05570 496 PRINTS DnaJ domain signature 124 143 IPR001623 -
Tsu02g05570 496 PRINTS DnaJ domain signature 70 88 IPR001623 -
Tsu02g05570 496 PRINTS DnaJ domain signature 104 124 IPR001623 -
Tsu02g05570 496 SUPERFAMILY HSP40/DnaJ peptide-binding domain 332 417 IPR008971 GO:0006457|GO:0051082
Tsu02g05570 496 Hamap Chaperone protein DnaJ [dnaJ]. 65 480 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Tsu02g05570 496 Pfam DnaJ central domain 215 279 IPR001305 GO:0031072|GO:0051082
Tsu02g05570 496 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 202 282 IPR036410 -
Tsu02g05570 496 Gene3D - 331 423 - -
Tsu02g05570 496 CDD DnaJ_C 186 409 - -
Tsu02g05570 496 MobiDBLite consensus disorder prediction 420 472 - -
Tsu02g05570 496 TIGRFAM DnaJ_bact: chaperone protein DnaJ 68 422 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Tsu02g05570 496 Gene3D - 215 279 - -
Tsu02g05570 496 SMART dnaj_3 67 124 IPR001623 -
Tsu02g05570 496 CDD DnaJ_zf 215 279 IPR001305 GO:0031072|GO:0051082
Tsu02g05570 496 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 57 435 - -
Tsu02g05570 496 PANTHER MOLECULAR CHAPERONE HSP40/DNAJ FAMILY PROTEIN 57 435 - -
Tsu02g05570 496 ProSiteProfiles dnaJ domain profile. 68 132 IPR001623 -
Tsu02g05570 496 SUPERFAMILY Chaperone J-domain 64 174 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05570 Tsu-Chr2 63961033 63969130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05570 52 175 C2H2 Transcription Factor Family AT1G74250 35.878 9.52e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05570 K03686 - gmx:100798567 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05570 02 63961033 63969130 Tsu02g05570 02 63961033 63969130 ECH