Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05562 ATGACACTTTATATGGATTCTAATTCTACCGcagaaaaaatgaaagaagTGCAAGATGGTAATTATGTCTTCAAAGAAGAGATCCATTACACAGTGCTTAAAACCTCTTTATTCTTCTCCGGCGATGGTTTTACCGTCTATGATTGTCACGGTCAACTCGTTTTCCGAGTTGACTCATATGGACCTGATTCTCGCAACCTTGATGAACTCGTTCTCATGGATCCAGATGGCCGTTGTCTACTCACTGTTCGCCGGAAGAGGCCGAGTTTGCATCAAAGGTGGGAAGGCTTTAAAGGTGAAAGAATAGACGGTGATAAACCAACCTTCAGCGTAAAAAGATCATTGATGATTGGACGATCACATTCAGGAGTGACAGTAGAGGTGTACAACAACTCTAGTGAGGAGTACCACATCGAAGGGTGCTTCTCACAGCGTTGTTGCACCGTTTTTAACATGATGAAGGAAACGGTGGCTGAGATTCATCGCAAAGTGGACCCCACCACAGGTGTTATGCTTGGGAAAGAAGTGTTAACTCTTTGTGTTAAGCCTGGTTTTGATGCTGCATTTGCAATGGGATTTGTTCTTGTACTTGATCAAATTAGTGGTAATGATTCCCTTGATGATGATGCAACTATGGAGCCTACGGGGAAGAGGCAGGAGGTACGGAAGTTGGTTGGGAATCATAACCCTTTTTTGATGTGTATTCAAGAAACTAAACTGCAGTTTGTTGATCCGGTTGTCTGCTCATCTCTTTGGGGTAATTCACCATACGCTTTTTCTTATCGGCCCTCGTTAGGAGCGTCGGGGGGGCTGTTAACTCTCTGGGATTCTTCTGAGGCGCTTGGGAGATCTAGGGTGTGTGTCTGCGGGGATTTTAATGCAGTGAGAAGTATTGAAGAGCGTCGGTCGGGTCGTGGTTGGCCGTCGTCCCTTGACCATCTCTCGTTTAATCGCTTTATTGAGGATAACAATCTTTTTGATCTCCCGCTGAGTGACCGCAAATTCACTTGGTTCAAAGGGGATGGTCTTTCGATGAACCGTCTGGATAGGTTCTTGCTTTCTGGGAAGTGGTGTTTGACGTGGCCTAATTGTACTCAGGTAGCACGAATGAGAGGGTTATCTGACCACTGTCCTCTGATTTTGGCTGGCAATGAGGAGGGGTGGGGTCCTCGTCCCTCGCGAATGCTTAAATGTTGGAAGGATGTTCCTGGCTATAACATTTTCGTGAAAGATAAGTGGAATTCCTTTAAGGTCGATGGCTGGGGTGGCCCGGTATGGGGTGGAGAGAGGCAGACTGTGTGCATGAGGGAGGAGAGGGTCGGCGTGGTGGAGGGAGATGGGATCCCGttgtgtgagcggtttgggAGGCTTTTTGACTTGGCAGCGAACAAATCAGTTTTTGTAGCTGATATGTTTCAGTCAGGGTGGGGTGTAGGAGGAGAGACTTGGGCTCACACTTCAGATAGATGGTTATGGCAGCCGGATTTGGATCGCGGTTACACTGTTCGTAGTGCCTATCAGTTATTGACGCATCAGGTTGTGGTTTCTTTAGAGGCAGCGACAGGTCTTATTTGGTAttctcaggttcctttgaaggtttccattCTCGTATGGAGACTCTTGCGGGATCGGTTACCTACCAAAGCAAACCTGACCTCTCGTGGTATTCTATCATTGGGGGATAGTCATTGTGTTTCTGGTTGTGGATCGGTGGAGTCGGCTCATCATGTGTTCATTTCTTGCAGCATGTTCGGATCTCTGTGGTCTCTTGTCAGTTTTTGGGTTGGTTCGGCTCCGCTAGCCACAACCTTCTCATCCTTCCTTTGTCAATGCTATGAAATGATGGGCTTATTGAAAAATGGAATCTTGATTATATATGTGTTGATGATGCTCTTTCTGTTAACAATCTGTCAAGCCAATGATCAACACATTCGACAGATATATCCCGGATTCAGTGCATCGCGTTTAGATTGGAACGACCATAACGGTTTTTTCTTACTATCCAACAACACTCTTGATGTTTCATTGTTTGTTTTAGTAGTCATTCATTTGAGTAGCTACAAAGTTGTTTGGACTGCAAATAGAGGTTTGCTTGTTAGAAATTCtgataaatttgtgtttgatcATAGTGGTAATGCTTATTTAGAAAGTGGAAATAGTTTTGTTTGGGAAACAAACACAACAGGACAAAAAGTTAGGGACATGGAATTGTTGGATTCAGgaaatttggttttgtttggtgAAAATAAGAAAGTTATTTGGCAAAGTTTTAGTCATCCTACTGATACACTTTTGCCTGGTCAATCCTTTGTTGATGGGATGAGTCTTAAAAGTTTCCCGAATCGAATGAACTTGTTTCATTATTTTGGTTATATAGAAGGTGATTTAGTTCTATATGCAGGTTTTGAAACGCCGCAATTGTATTGGTCTTTAATGGAAGAAGTTAGTAATAAAAGTTCAAAAAATGTAACAGGTAAGAATAGTAAGGTTCACTATGCTTCTTTGGTTTCTAATTCATGGAACTTTTATGATAAAGTTGGTGCTTTGGTTTGGAAAATTGTATTTTCTGATCATTCCGATCCTAAGTCATTCTATGCTGCTATTTTGGATCCCAATGGCGCGATATCTTTTTATGATCTTAACAAAGGAAAATCTACTAATCCTGAGGTGTTTAAATTACCACAAGACCCTTGTGGAATTCCTGAGCCTTGTGATCCTTACTATGTTTGTTTCTTTGAGAATTGGTGCGAATGTCCTACTCTTCTTCGATCGCGTTTCAATTGTAAACCACCTAACATCTCAGCTTGTTCTCCTAGGAGTACTTCAACAGAACTTCTATATGTCGGTGAAAATCTTGATTATTTTGCGCTAAAGTATGACGCGCCTGTTTTAAAATCAACATTGAATTCATGCAAAGATGCTTGTGTGAGAAATTGTTCGTGCCTTGTACTTTTCCATGAAAACAGTACTGGTAGATGCTTTCATTTTGATCAAACCGGAAGCTTCCAACGATTTAAAGGGAGCAGTGGCGGTTTTGTTTCATATATGAAGGTTTCAACCGACAGTGGTGGCATTGTCCGCAACAATAGAGGAAGAAATGACATGGTGATAGTTTCTGTCATAGGAATTCTCACAGTTTTGGCTATTTTTGGTCTTATAACTGGATTTTGGTGCTACTATAAGACGAAGAACAAGAACTTTGATAAGTATCCTCAAGATACTTTAGAGGAAGATGATTTCTTTGATGGTCTCTCTAGTATGCCGGCGCGATTTACTTATAGTACTCTAGCTAGAGCAACTAAGGACTTCTCCACGAAAATCGGGGAAGGAGGATTTGGCTCAGTGTATCTAGGATTACTTGAAGATGAAACACAATTGGCAGTGAAAAAATTGGAAGGAGTTGGACAAGGAGCAAAAGAGTTCAAAGCAGAAGTATCGATAATTGGAAGTATTCACCATGTTCATCTTGTGAAGCTTAAAGGGTTCTGTGCCGAAGGTCCTCATCGCCTTCTTGTGTATGAGTATATGGCAAGAGGTTCATTGGATAAATGGATCTTCAAAAACAGTGAAAACACTTTGTTGTTAACTTGGGAAACAAGGTACAACATTGCAATAGGAACTGCAAAAGGATTGGCCTATCTTCATGAGGAGTGTGAGGTTAGGATCATTCATTGTGATATCAAACCACAAAATGTTCTTCTTGATGATAATTTCATGGCTAAGGTTTCGGATTTCGGATTGGCGAAGCTAATGAGCAGAGAACAAAGTCATGTTTTCACAACTCTTAGAGGAACAAGAGGTTATTTAGCACCAGAATGGATAACTAATTACGCGATTTCAGAGAAGAGTGATGTGTTTAGCTATGGAATGCTTTTGCTTGAGATTATTGGTGGAAGGAAAAACTATGATCAATGGGAAGGACCAGATAAAGCGCATTTTCCTTCTTATGTATCAAGAATGATGGAGGAAGGAAAAATAAGAGAAGTTATTGATCAAAAGATAGATATTGACGAGAACGATGAAAGTGTTGTGACGGCTCTTAAAGTTGCTCTTTGGTGTATACAAGATGATATGAATTTGAGACCTTCCATGAGTAATGTTGTTCAGATGCTAGAAGGTTTGTGTCAAGTGAATGATCCACCATTGTTACAATCAAGTACCTATTCAGCTTACTTGAAAATGAGTAGTGGAGAAGCTAGTTCATCAGGACAAGCTAGTTTTTATAGTAATGTGCCTTTGTCTTGTGTTCAATTATCAGGACCAAGATGA 4269 0.4031 MTLYMDSNSTAEKMKEVQDGNYVFKEEIHYTVLKTSLFFSGDGFTVYDCHGQLVFRVDSYGPDSRNLDELVLMDPDGRCLLTVRRKRPSLHQRWEGFKGERIDGDKPTFSVKRSLMIGRSHSGVTVEVYNNSSEEYHIEGCFSQRCCTVFNMMKETVAEIHRKVDPTTGVMLGKEVLTLCVKPGFDAAFAMGFVLVLDQISGNDSLDDDATMEPTGKRQEVRKLVGNHNPFLMCIQETKLQFVDPVVCSSLWGNSPYAFSYRPSLGASGGLLTLWDSSEALGRSRVCVCGDFNAVRSIEERRSGRGWPSSLDHLSFNRFIEDNNLFDLPLSDRKFTWFKGDGLSMNRLDRFLLSGKWCLTWPNCTQVARMRGLSDHCPLILAGNEEGWGPRPSRMLKCWKDVPGYNIFVKDKWNSFKVDGWGGPVWGGERQTVCMREERVGVVEGDGIPLCERFGRLFDLAANKSVFVADMFQSGWGVGGETWAHTSDRWLWQPDLDRGYTVRSAYQLLTHQVVVSLEAATGLIWYSQVPLKVSILVWRLLRDRLPTKANLTSRGILSLGDSHCVSGCGSVESAHHVFISCSMFGSLWSLVSFWVGSAPLATTFSSFLCQCYEMMGLLKNGILIIYVLMMLFLLTICQANDQHIRQIYPGFSASRLDWNDHNGFFLLSNNTLDVSLFVLVVIHLSSYKVVWTANRGLLVRNSDKFVFDHSGNAYLESGNSFVWETNTTGQKVRDMELLDSGNLVLFGENKKVIWQSFSHPTDTLLPGQSFVDGMSLKSFPNRMNLFHYFGYIEGDLVLYAGFETPQLYWSLMEEVSNKSSKNVTGKNSKVHYASLVSNSWNFYDKVGALVWKIVFSDHSDPKSFYAAILDPNGAISFYDLNKGKSTNPEVFKLPQDPCGIPEPCDPYYVCFFENWCECPTLLRSRFNCKPPNISACSPRSTSTELLYVGENLDYFALKYDAPVLKSTLNSCKDACVRNCSCLVLFHENSTGRCFHFDQTGSFQRFKGSSGGFVSYMKVSTDSGGIVRNNRGRNDMVIVSVIGILTVLAIFGLITGFWCYYKTKNKNFDKYPQDTLEEDDFFDGLSSMPARFTYSTLARATKDFSTKIGEGGFGSVYLGLLEDETQLAVKKLEGVGQGAKEFKAEVSIIGSIHHVHLVKLKGFCAEGPHRLLVYEYMARGSLDKWIFKNSENTLLLTWETRYNIAIGTAKGLAYLHEECEVRIIHCDIKPQNVLLDDNFMAKVSDFGLAKLMSREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVFSYGMLLLEIIGGRKNYDQWEGPDKAHFPSYVSRMMEEGKIREVIDQKIDIDENDESVVTALKVALWCIQDDMNLRPSMSNVVQMLEGLCQVNDPPLLQSSTYSAYLKMSSGEASSSGQASFYSNVPLSCVQLSGPR 1422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05562 1422 CDD STKc_IRAK 1107 1374 - -
Tsu02g05562 1422 Pfam Protein kinase domain 1104 1369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05562 1422 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 616 1422 - -
Tsu02g05562 1422 SUPERFAMILY DNase I-like 216 381 IPR036691 -
Tsu02g05562 1422 ProSitePatterns Protein kinases ATP-binding region signature. 1107 1130 IPR017441 GO:0005524
Tsu02g05562 1422 Pfam LURP-one-related 18 196 IPR007612 -
Tsu02g05562 1422 SUPERFAMILY Protein kinase-like (PK-like) 1085 1372 IPR011009 -
Tsu02g05562 1422 CDD B_lectin 662 760 IPR001480 -
Tsu02g05562 1422 SUPERFAMILY alpha-D-mannose-specific plant lectins 686 810 IPR036426 -
Tsu02g05562 1422 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 616 1422 - -
Tsu02g05562 1422 Pfam D-mannose binding lectin 689 770 IPR001480 -
Tsu02g05562 1422 SMART blect_4 647 760 IPR001480 -
Tsu02g05562 1422 Pfam zinc-binding in reverse transcriptase 500 588 IPR026960 -
Tsu02g05562 1422 Gene3D Endonuclease/exonuclease/phosphatase 276 382 IPR036691 -
Tsu02g05562 1422 ProSiteProfiles Protein kinase domain profile. 1101 1383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05562 1422 Gene3D - 17 205 IPR038595 -
Tsu02g05562 1422 ProSiteProfiles Bulb-type lectin domain profile. 641 758 IPR001480 -
Tsu02g05562 1422 Gene3D Transferase(Phosphotransferase) domain 1 1176 1385 - -
Tsu02g05562 1422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1222 1234 IPR008271 GO:0004672|GO:0006468
Tsu02g05562 1422 Gene3D - 662 758 IPR036426 -
Tsu02g05562 1422 SUPERFAMILY Tubby C-terminal domain-like 19 200 IPR025659 -
Tsu02g05562 1422 SMART serkin_6 1101 1371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g05562 1422 Gene3D Phosphorylase Kinase; domain 1 1069 1175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05562 Tsu-Chr2 63874322 63888230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05562 1037 1381 Receptor kinase-like Gene Family AT5G20050 42.466 7.71e-87 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu02g05562 Pkinase 3.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05562 - - gmx:100816004 1256.12