Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05553 ATGGTACAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGATCTTGGGTCTCTGAGATTCGTCATCCATTATTGAAAAGGAGGGTGTGGTTAGGAACATTTGAAACAGCTGAAGAAGCAGCTAAAGCATATGATGAAGCAGCAATTTTGATGAGTGGAAGAAATGCAAAAACTAATTTTCCAATTAATGtggaaaataaaatcaattctatttcaacttcttcttccaaaGCATTTTCTGCAGTTCTTAATGCAAAGTTAAGGAAGTGTTGCAAGTTTCCTTCACCTTCACTCACTTGTCTAAGGCTTGATGCAGAGAATTCACACATTGGTGTGTGGCAGAAAGGTGCCGGTCCTCGTTCTGAATCAAATTGGATTATGATGGTTGAgttggaaaggaaaaaaagtgCTTCTGATTCAGAATTTTCATCAAAGGCAGAGAAAGTAAAGTCAGAGGAATTAAGTAAAAATGGTTTGGATGAAGAACAGAAAATTGCTTTGCAGATGATAGAAGAACTTCTCAATAGAAACTAA 540 0.3426 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPINVENKINSISTSSSKAFSAVLNAKLRKCCKFPSPSLTCLRLDAENSHIGVWQKGAGPRSESNWIMMVELERKKSASDSEFSSKAEKVKSEELSKNGLDEEQKIALQMIEELLNRN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05553 179 MobiDBLite consensus disorder prediction 137 157 - -
Tsu02g05553 179 Gene3D AP2/ERF domain 5 66 IPR036955 GO:0003700|GO:0006355
Tsu02g05553 179 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Tsu02g05553 179 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Tsu02g05553 179 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Tsu02g05553 179 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 179 - -
Tsu02g05553 179 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Tsu02g05553 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WIN1-LIKE 1 179 - -
Tsu02g05553 179 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Tsu02g05553 179 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Tsu02g05553 179 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05553 Tsu-Chr2 63823128 63824002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05553 1 179 AP2-EREBP Transcription Factor Family AT1G15360 60.784 5.98e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu02g05553 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05553 - - gmx:100778381 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05553 02 63823128 63824002 Tsu02g05553 02 63823128 63824002 ECH