Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05524 ATGGAAGCTGAAAGGTACTCTGAGAAATTCAAAACTCAGCTATGCAGACAATTCATGCAAGGAGCTTGTGCTCTTGGAGCTAGATGCAACTATGCACATGGCTACTCTGAACTCAGAGAAATACCAAAACTCTGCAGAATGTTCTCATTCAACAGACATTGCTCCTTTGGAAACAACTGTCGTTTCATCCATTCAACTCCTCATTATCAGGATTATGCTGTCATCAACAACACTCCACAACAACAACTAGGCACAGTGCAGAATGCAGGATGCAAGACCATGCAAACTGGCGCTCCTGCTGCTGCAATTAATGGTGGTTCGTCTTCTGCACAAAACAAGATGGTGCGAACTTCTACTGTTCCTGCTACAAATGACCCAGCCAGCAGTAGCACGGTGGCCACAACCAAGTTGCATAAGAATGGACCCTATGCTGGTAAATCCATGTTCGACAAAACGGCCATGCAAAATGTCATTGGCAAATATGGTGATTGGATTTAA 498 0.4418 MEAERYSEKFKTQLCRQFMQGACALGARCNYAHGYSELREIPKLCRMFSFNRHCSFGNNCRFIHSTPHYQDYAVINNTPQQQLGTVQNAGCKTMQTGAPAAAINGGSSSAQNKMVRTSTVPATNDPASSSTVATTKLHKNGPYAGKSMFDKTAMQNVIGKYGDWI 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05524 165 Gene3D - 42 69 - -
Tsu02g05524 165 Gene3D - 4 40 - -
Tsu02g05524 165 ProSiteProfiles Zinc finger C3H1-type profile. 9 36 IPR000571 GO:0046872
Tsu02g05524 165 ProSiteProfiles Zinc finger C3H1-type profile. 39 67 IPR000571 GO:0046872
Tsu02g05524 165 SUPERFAMILY CCCH zinc finger 42 66 IPR036855 GO:0046872
Tsu02g05524 165 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 43 65 IPR000571 GO:0046872
Tsu02g05524 165 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 10 34 IPR000571 GO:0046872
Tsu02g05524 165 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 7 164 - -
Tsu02g05524 165 SUPERFAMILY CCCH zinc finger 8 40 IPR036855 GO:0046872
Tsu02g05524 165 SMART c3hfinal6 9 35 IPR000571 GO:0046872
Tsu02g05524 165 SMART c3hfinal6 39 66 IPR000571 GO:0046872
Tsu02g05524 165 PANTHER CCCH ZINC FINGER/TIS11-RELATED 7 164 IPR045877 GO:0003729
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05524 11 86 C3H Transcription Factor Family AT1G68200 29.762 5.41e-08 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu02g05524 zf-CCCH 1.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05524 - K18753 cam:101493245 166.007