Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05503 ATGAGGAATTTGAGTGCTGGAGAGGTCTCAAGTCGACTGACTCGTGCTCGAGCTGCTGCTTTAAGTGCAACTGGACAGTTGCCACCATTGAAGGATGCAAGACAAGAAACTCAAAAGCAAACCCTAAGAGCCAATTCAAAAAGAGCAGTTTCGGATGATGCATATCTTCCGCATAAGAAGAGGGGAATTCTTCAGGATGTTACTAACATTAGCTGTGAAGTTCAGGCTAAGAAACGCAAGCTGGCTAAATCTGCTCAACCACCAGTTTCCACAGAGATACCACAACTTGTAGCTGACTCAAAACAGGTGAGTTCAACGGAAATGCGACTTAGATCATCAGAAGATATCATGTGCTTAGTTAGTATGGAAGGCAATGCACTTGTTAGGCTGAGTACCAACCAATGTGCCACAAATAATAATCTGCTTCACAGTCAGGCGTCTCGAATATCTGCTCAGCCTTTGGTTTCTCAAAAGAAAGCTTCACAAACTTTTGCAGCCAAGAAAGACAATAATTTTGAACTTCTGGATGTGTTGAAGCATCCAGATGTTGCTGACATAGACGCTGATTTTGAAGATCCTCAACTTTGCAGCCACTATGCTGCTGATATATATGACCACTTTCGTGTTTCTGAGCTGTCGAGAAGGCCTTATCCTAACTTCATGGAAACAGTACAACAAGATATCACTCCAAGCATGCGTGCGATACTCGTTGATTGGCTTGTTGAGGTTTCTGAGGGATACAAATTGCAAGCAAACACTCTTTACCTCACTGTATATCTCATTGATTGGTTTCTCTCCAAAAATCACATTGAAAGACAGAGGCTTCAGCTACTTGGCATCACTTGCATGCTAATTGCTTCGAAGTACGAAGAAATTAATGCCCCTCGTGTTGAAGACTTCTGCTTCATCACAGAGAACACATACACAAAAGAGGAGGTACTGAAAATGGAGTCGCTAGTGTTGAAATCCTCTGCATATCACCTGTTTGCTCCCACTACAAAAACTTTCTTGAGGAGGTTTCTTCGAGCAGCACAAGCTTCTTACAAGAGACCTAGCATCGAGTTGGAGTACTTGGCAAATTACCTGGCAGAACTAACACTGATGAACTATGGCTTCTTAAATTTCCTTCCTTCTATGATTGCTGCATCTGCCGTATTTCTCGCAAGATGGACATTAGACCCGTCAAACCATCCATGGAATCCAACTCTTGAGCATTACGCCTCTTACAAAGCACCAGATTTGAAAGCCACAGTTCTTGCATTGCAAGATCTACAGCTGAATAACAATGACTGTCCTTTAACTGCAATCCGCATGAAGTATTCACAAGACAGGcTCAAATGTGTAGCAGCTTTATCTTCAACAAAACTACTTGACACAATGTTCTGA 1386 0.4228 MRNLSAGEVSSRLTRARAAALSATGQLPPLKDARQETQKQTLRANSKRAVSDDAYLPHKKRGILQDVTNISCEVQAKKRKLAKSAQPPVSTEIPQLVADSKQVSSTEMRLRSSEDIMCLVSMEGNALVRLSTNQCATNNNLLHSQASRISAQPLVSQKKASQTFAAKKDNNFELLDVLKHPDVADIDADFEDPQLCSHYAADIYDHFRVSELSRRPYPNFMETVQQDITPSMRAILVDWLVEVSEGYKLQANTLYLTVYLIDWFLSKNHIERQRLQLLGITCMLIASKYEEINAPRVEDFCFITENTYTKEEVLKMESLVLKSSAYHLFAPTTKTFLRRFLRAAQASYKRPSIELEYLANYLAELTLMNYGFLNFLPSMIAASAVFLARWTLDPSNHPWNPTLEHYASYKAPDLKATVLALQDLQLNNNDCPLTAIRMKYSQDRLKCVAALSSTKLLDTMF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05503 461 Pfam Cyclin, C-terminal domain 331 453 IPR004367 -
Tsu02g05503 461 Gene3D - 216 329 - -
Tsu02g05503 461 PANTHER CYCLIN-A2-4 41 461 - -
Tsu02g05503 461 PANTHER CYCLINS 41 461 IPR039361 -
Tsu02g05503 461 SMART Cyclin_C_2 331 454 IPR004367 -
Tsu02g05503 461 MobiDBLite consensus disorder prediction 31 47 - -
Tsu02g05503 461 SUPERFAMILY Cyclin-like 331 454 IPR036915 -
Tsu02g05503 461 CDD CYCLIN 232 321 IPR013763 -
Tsu02g05503 461 SMART cyclin_7 335 423 IPR013763 -
Tsu02g05503 461 SMART cyclin_7 238 322 IPR013763 -
Tsu02g05503 461 MobiDBLite consensus disorder prediction 22 50 - -
Tsu02g05503 461 Pfam Cyclin, N-terminal domain 202 323 IPR006671 -
Tsu02g05503 461 Gene3D - 202 450 - -
Tsu02g05503 461 CDD CYCLIN 331 409 IPR013763 -
Tsu02g05503 461 PIRSF Cyclin_A_B_D_E 7 460 IPR039361 -
Tsu02g05503 461 SUPERFAMILY Cyclin-like 191 323 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05503 Tsu-Chr2 63342440 63347432 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05503 13 461 Core Cell Cycle Gene Families AT1G80370 51.193 1.44e-153 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05503 K06627 - gmx:100793657 568.54