Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05487 ATGGATGACATTGAGGATGATGCAATTGGAAGTTATCCTCCAAACCCTAACAACAATCATGGTTATGGTTATATGGAACATCCTTTGGGGAATTCTTCATATTCTCGTTCGGTTGCGAATGAATCTGCCCGAGATTATAAtgatgttgttgctgttgatgacgacgatgataatgatgatgatgttgctgTTGAAGATGAAAACCGGTTAGGAGGGGAAGATGatattgttgatgttgttgatgatgatgataatgatgatgttgaTCGAAATAGGAGTGTTCAAAATTCCTTGAACCAGGTTGATGAAGATGGTGACATGGACGGAGATGGGGATGGTGATGAAAATGATGATAACAATAGTGATGATAATGACCAACAACAGAACGAGGAATATGGTTATGTGAAACATTCTGTGAGGAATTCTCCATATTCTCAGTCATTTGCAAATGATGGTAACAATGACGAGgatggagaagatgaagagCGGTTGGTGGAGGAAGATGACAgggatggtgatgatgatgatgatgttgatcaAATTAACAATGTTCAGCTTTCTCCAAAGCAAGTTGATGAAGAAGATAACTATGATGAGGATGGGGATAGGGATGAAAATGACGATGACAATGACAACGACGGTGATAATGACGATAAGCAGAAAAGTTATGCCATTATAAATAATGAAGATGAATTTGAGTGGCACCCAAAAAAGCAAAAGCTGAAGAGTTTGATTTCAACCTATGAATTCGCAGCTCGGGTGCCGACACCATCAGCTGTAGCTACTTCAGCTACTAAACCATCTTTTGGGGTTAGAAATTCCCTTACTGAGTGGACTGAGAAGGAGACATTTGTTCTTCTTGATGCGTGGGGTGATCGGTTTCTTCAACATGGAAGGAAGAGTATTCGATCTGATGAATGGCAACAAGTTGCAGAAAAGGTATCACAAGTTTCAAGAGTTGAAAGAACAGGTACTCAGTGTAGAAATCGTTTAGATACattgaagaaaaaatacaaaaaggaCAAGATTAAGTTTTCAGAAATGGGTGGTGGAGATAGAAAATgggtttattttaaaaagatggATAAGCTAATGTCTTCTCCGCCACAACAGACAGGTTTCTCTTGTGGTCTGGACTCAAGAGAGAGTGTTGTCATGAAGCCCAGAGTTTATGTAAATCATGCAAATGGGTTGGATGACATGAAAGATAGTTCTGAGAATACTGAATCTGTCGGTGTAGAAGGTTCAGATGGACCTCGtgcaaagaaaaaaaggaaggGAAGGAGCGGCAGTGAGGATTCTTCCTTCAAATTACTTGCTGATTCCATTCAGAATTTTGGTAAGATATATGAGAAGATTGAAAATAGTAAAAGGCAGCAGATGCTGGAACTGGAAAAGATGAGGATGGATTTCCTCAATGATTTGGAAATACAAAAGAGAcagatttttgaaaaattgcagAGTGAGATTTTAAAACTAGAGCAAAGAGATGATTAG 1497 0.3367 MDDIEDDAIGSYPPNPNNNHGYGYMEHPLGNSSYSRSVANESARDYNDVVAVDDDDDNDDDVAVEDENRLGGEDDIVDVVDDDDNDDVDRNRSVQNSLNQVDEDGDMDGDGDGDENDDNNSDDNDQQQNEEYGYVKHSVRNSPYSQSFANDGNNDEDGEDEERLVEEDDRDGDDDDDVDQINNVQLSPKQVDEEDNYDEDGDRDENDDDNDNDGDNDDKQKSYAIINNEDEFEWHPKKQKLKSLISTYEFAARVPTPSAVATSATKPSFGVRNSLTEWTEKETFVLLDAWGDRFLQHGRKSIRSDEWQQVAEKVSQVSRVERTGTQCRNRLDTLKKKYKKDKIKFSEMGGGDRKWVYFKKMDKLMSSPPQQTGFSCGLDSRESVVMKPRVYVNHANGLDDMKDSSENTESVGVEGSDGPRAKKKRKGRSGSEDSSFKLLADSIQNFGKIYEKIENSKRQQMLELEKMRMDFLNDLEIQKRQIFEKLQSEILKLEQRDD 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05487 498 MobiDBLite consensus disorder prediction 193 214 - -
Tsu02g05487 498 MobiDBLite consensus disorder prediction 1 229 - -
Tsu02g05487 498 ProSiteProfiles Myb-like domain profile. 278 335 IPR001005 -
Tsu02g05487 498 Coils Coil 450 470 - -
Tsu02g05487 498 MobiDBLite consensus disorder prediction 153 180 - -
Tsu02g05487 498 MobiDBLite consensus disorder prediction 50 68 - -
Tsu02g05487 498 MobiDBLite consensus disorder prediction 215 229 - -
Tsu02g05487 498 MobiDBLite consensus disorder prediction 416 432 - -
Tsu02g05487 498 Pfam Myb/SANT-like DNA-binding domain 277 364 IPR044822 -
Tsu02g05487 498 MobiDBLite consensus disorder prediction 396 434 - -
Tsu02g05487 498 MobiDBLite consensus disorder prediction 126 152 - -
Tsu02g05487 498 PANTHER OS01G0718900 PROTEIN 168 498 - -
Tsu02g05487 498 Gene3D - 278 340 - -
Tsu02g05487 498 MobiDBLite consensus disorder prediction 103 125 - -
Tsu02g05487 498 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 168 498 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05487 Tsu-Chr2 63180609 63182880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05487 439 495 Trihelix Transcription Factor Family AT3G14180 50.877 2.00e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu02g05487 Myb_DNA-bind_4 2.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05487 - - mtr:MTR_2g102227 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05487 02 63180609 63182880 Tsu02g05487 02 63180609 63182880 ECH