Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05475 atggaatTTTGGAGAGAATATGTTATGAAGAACAATGTAGGAAGAGAGTTTGTAGCAGGTGGATTTGGAGGAACAGCTGGTATCATAACAAGTTACCCTGTGGATACACTTCGTGTCATGCAACAACAGTCAGGCAATGCATCTGCTATCAGCATCCTTAGAAATTTGTTGTCTAAGGAAGGACCAACTGCTCTCTACCGTGGCATGGCTGTTCCTTTAGCCTCTGTTGGTTTtcaaAACGCTATGATTTTTCAAAGTTATACAGTTTTTACGAGGATTTGTAGCCCTTCTATTTCTTCCGATGGACCTCCTTCCCTCGTAAATGTTGCTCTAGGAGGACTTGGTGCAGGTGCTCTCCAAAGTCTTTTGATCTCCCCTGTTGAGCTagttaaaattcaaattcagcTTCAAAAAAGCAATGACAATTTTCTTGAAAACAAAAAGATCACTCCTATGAATTTGGCTAAGAACATTTGGAAAAATGAGGGTCTTCGCGGCATTTATCGAGGATTTGGCATCACACTTCTTAGAGATGCACCTGCTCTTGGCTTCTACTTTGGTACATATGAGTACACAAGGGAGAAACTTCACCCTGGTTGTAGAGAAAGTTGTCAAGAAAATATGAGTACTATGTTTATAGCCGGCGGATTAGCAGGGATGGCGAGTTGGCTTTTCAACTATCCTACGGACGTTATAAAGACGAGATTGCAGGCTCAAACATCTTCTTCCATGAAATACAAAGGTATTTTAGATTGCACCTTGAAAATAGTCAAAGAAGAAGGTTCAATTGTGCTATGGAGGGGTTTAGGAGCAACACTTGTTAGAGCATTTGTGATGAATAGTGCTATATTTCCTGTTTATCAGGTTGCTCTAAGGTGTTTGGCCAACAATTAA 894 0.3949 MEFWREYVMKNNVGREFVAGGFGGTAGIITSYPVDTLRVMQQQSGNASAISILRNLLSKEGPTALYRGMAVPLASVGFQNAMIFQSYTVFTRICSPSISSDGPPSLVNVALGGLGAGALQSLLISPVELVKIQIQLQKSNDNFLENKKITPMNLAKNIWKNEGLRGIYRGFGITLLRDAPALGFYFGTYEYTREKLHPGCRESCQENMSTMFIAGGLAGMASWLFNYPTDVIKTRLQAQTSSSMKYKGILDCTLKIVKEEGSIVLWRGLGATLVRAFVMNSAIFPVYQVALRCLANN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05475 297 Pfam Mitochondrial carrier protein 12 93 IPR018108 -
Tsu02g05475 297 Pfam Mitochondrial carrier protein 105 196 IPR018108 -
Tsu02g05475 297 Pfam Mitochondrial carrier protein 208 296 IPR018108 -
Tsu02g05475 297 SUPERFAMILY Mitochondrial carrier 13 287 IPR023395 -
Tsu02g05475 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 195 IPR018108 -
Tsu02g05475 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 93 IPR018108 -
Tsu02g05475 297 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 295 - -
Tsu02g05475 297 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 295 - -
Tsu02g05475 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 206 293 IPR018108 -
Tsu02g05475 297 PRINTS Mitochondrial carrier protein signature 168 186 IPR002067 GO:0055085
Tsu02g05475 297 PRINTS Mitochondrial carrier protein signature 215 237 IPR002067 GO:0055085
Tsu02g05475 297 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Tsu02g05475 297 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Tsu02g05475 297 Gene3D Mitochondrial carrier domain 7 296 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05475 Tsu-Chr2 63097428 63100120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05475 1 297 Antiporters AT1G79900 58.725 1.20e-111 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05475 K15109 - gmx:100801221 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05475 02 63097428 63100120 Tsu02g05475 02 63097428 63100120 ECH