Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05474 ATGATGGAGTTTTGGAGAGAATATGTTGTGAAGAACAATGTGGGGAGAGAGTTTGTAGCGGGTGGATTTGGAGGCACGGCCGGTATCATTACGAGTTATCCATTCGATACTCTTCGCGTCATGCAACAACAGTCTGGCAACGCCTCTGCCATTGGCATCCTCAAAAATTTGTTGACTAAGGAAGGACCAACTGCTCTCTACCGTGGCATGGCTGTTCCTTTGGCCTCTGTTGGTTTTCAAAATGCTATGATTTTTCAAAGTTATACAATTTTCACAAGGATATGTAGCCCTTCACATTCTTCTAATGGACCTCCTTCCCTCACAAATGTTGCTTTAGGAGGACTAGGTGCAGGTGCTCTCCAAAGTATTTTGATATGCCCCGTTGAGCTCGTTAAAATCCGCATGCAACTGCAAAAAAACATAGACTATTTTCCGAAAAACAAAAGGAGCACTCCTATGAATCTGGCTAAGAACATTTGGAAAAATGAGGGCATTCGTGGCATTTATCGAGGATTTGGCATCACCGTTCTTAGAGATGCACCTGCTCATGCCTTCTACTTTGGGACATATGAGTACTTGAGGGAGAAACTTCACCCTGGTTGTAGAGAAAATTGTGAAGAAAGTGTGAGTACTATGTTTATAGCTGGTGGATTAGCAGGAATATCAAGTTGGATTTTCAACTACCCTACAGATGTTATAAAGACAAGATTGCAGGCTCAAACATCTTCTTCATTGAAATACAAAGGTATCTTTGATTGCACTCTAAAGATAATTAAAGAAGAAGGTTCTATTGTGCTATGGAGGGGTTTAGGAGCTACAATTGCTAGAGCCTTTGTTATGAGTAGTGCAATATTTCCTGTTTATCAAATAGCTCTAAGGTGTCTCACCAACAACTAA 897 0.4103 MMEFWREYVVKNNVGREFVAGGFGGTAGIITSYPFDTLRVMQQQSGNASAIGILKNLLTKEGPTALYRGMAVPLASVGFQNAMIFQSYTIFTRICSPSHSSNGPPSLTNVALGGLGAGALQSILICPVELVKIRMQLQKNIDYFPKNKRSTPMNLAKNIWKNEGIRGIYRGFGITVLRDAPAHAFYFGTYEYLREKLHPGCRENCEESVSTMFIAGGLAGISSWIFNYPTDVIKTRLQAQTSSSLKYKGIFDCTLKIIKEEGSIVLWRGLGATIARAFVMSSAIFPVYQIALRCLTNN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05474 298 ProSiteProfiles Solute carrier (Solcar) repeat profile. 105 196 IPR018108 -
Tsu02g05474 298 ProSiteProfiles Solute carrier (Solcar) repeat profile. 207 294 IPR018108 -
Tsu02g05474 298 ProSiteProfiles Solute carrier (Solcar) repeat profile. 12 94 IPR018108 -
Tsu02g05474 298 SUPERFAMILY Mitochondrial carrier 14 288 IPR023395 -
Tsu02g05474 298 Pfam Mitochondrial carrier protein 107 197 IPR018108 -
Tsu02g05474 298 Pfam Mitochondrial carrier protein 208 297 IPR018108 -
Tsu02g05474 298 Pfam Mitochondrial carrier protein 13 94 IPR018108 -
Tsu02g05474 298 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 2 296 - -
Tsu02g05474 298 Gene3D Mitochondrial carrier domain 9 297 IPR023395 -
Tsu02g05474 298 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 2 296 - -
Tsu02g05474 298 PRINTS Mitochondrial carrier protein signature 17 30 IPR002067 GO:0055085
Tsu02g05474 298 PRINTS Mitochondrial carrier protein signature 216 238 IPR002067 GO:0055085
Tsu02g05474 298 PRINTS Mitochondrial carrier protein signature 120 138 IPR002067 GO:0055085
Tsu02g05474 298 PRINTS Mitochondrial carrier protein signature 169 187 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05474 Tsu-Chr2 63090077 63094468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05474 2 298 Antiporters AT1G79900 56.711 1.12e-108 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05474 K15109 - gmx:100801221 374.785