Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05463 ATGTGGTTTCAACAAAGGGGAAGGAAGTTGTACGTACAATCTGAACAATATCAGTATCAACCTTCATCCTCTAAGATGCCTATTTACATCGATCTTACTAAAAATGGGCCGGCACATGATTATTTCATTCCCTCGGAGACTTTTCCATCTAACTTTTGCAATAGACAGTTTCCGTCTTCACCGACTTTAAGAGAACACCAAAAATCTCATAAGCGAGAGCGCGAAATACATGGCGAAGAGAACAATAACAACTACAAGAAGATAGTGACAATGAAGGGGAAGGAAGTTGTGAAATCTGAACAACATCAACCTTCAAACTCTGTGATGCTTATTCCTATCATCGATCTCACAAATAATGGTTCAATTTGTGGGTGGATGAAGGTGCAAGAACATGATATCTTTACCTCTTCAAAGACTTTTCCATGCAAAATTTGCAATAGACAGTTCTTTTCTGCACAAGCTTTAGGAGGACATGGAAAAGTTCATAAGCGCAAACTCAAGCATCCTCAAGAGATCATGGAAAACTTTTCGATAAAATTAGAAGATAATGTTGGAGAGTCTTCTATAAATTATCATGATACCATCAAGGAAGAACCATTCGAGCCTGATTTGTCTCTTAAGCTATGA 627 0.378 MWFQQRGRKLYVQSEQYQYQPSSSKMPIYIDLTKNGPAHDYFIPSETFPSNFCNRQFPSSPTLREHQKSHKREREIHGEENNNNYKKIVTMKGKEVVKSEQHQPSNSVMLIPIIDLTNNGSICGWMKVQEHDIFTSSKTFPCKICNRQFFSAQALGGHGKVHKRKLKHPQEIMENFSIKLEDNVGESSINYHDTIKEEPFEPDLSLKL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05463 208 Pfam C2H2-type zinc finger 53 73 - -
Tsu02g05463 208 Pfam C2H2-type zinc finger 140 164 - -
Tsu02g05463 208 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Tsu02g05463 208 MobiDBLite consensus disorder prediction 59 82 - -
Tsu02g05463 208 SMART c2h2final6 48 70 IPR013087 -
Tsu02g05463 208 SMART c2h2final6 140 162 IPR013087 -
Tsu02g05463 208 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 167 IPR013087 -
Tsu02g05463 208 Gene3D Classic Zinc Finger 46 162 - -
Tsu02g05463 208 MobiDBLite consensus disorder prediction 64 82 - -
Tsu02g05463 208 PANTHER ZINC FINGER PROTEIN JAGGED 23 77 IPR045320 GO:0003700
Tsu02g05463 208 PANTHER ZINC FINGER PROTEIN JAGGED 107 164 IPR045320 GO:0003700
Tsu02g05463 208 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Tsu02g05463 208 SUPERFAMILY beta-beta-alpha zinc fingers 48 162 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05463 Tsu-Chr2 63042404 63043030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05463 53 163 C2H2 Transcription Factor Family AT3G10470 31.034 1.33e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g05463 zf-C2H2_6 2.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05463 - - cam:101494832 75.0997